BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG02RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1314 0.0
>3x_Contig1710
Length = 16151
Score = 1314 bits (663), Expect = 0.0
Identities = 753/774 (97%), Gaps = 7/774 (0%)
Strand = Plus / Minus
Query: 44 ctttgagagtcttgagattgattcc-ggtagaaagtacaccaccttgggtaagctatcta 102
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 11551 ctttgagagtcttgagattgaagccaggtagaaagtacaccaccttgggtaagctatcta 11492
Query: 103 cttccgttggttggaaatacgaagatgtcgttgccaagttggaagaaaagagaaaggcta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11491 cttccgttggttggaaatacgaagatgtcgttgccaagttggaagaaaagagaaaggcta 11432
Query: 163 gatctgctgaatactacttgaagaagaaggcttacaacgccgtcgttgccaactattttg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 11431 gatctgctgaatactacttgaagaagaaggcttacaacgccgtcgttgccaacaagtctg 11372
Query: 223 ctactgttggtactgaagtttccgaaaagttggctgctctaggttactaaactccatcat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11371 ctactgttggtactgaagtttccgaaaagttggctgctctaggttactaaactccatcat 11312
Query: 283 caaacaacatataaattttctaaagctcatcaaattgtatatcatttgtaaaacgttatt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11311 caaacaacatataaattttctaaagctcatcaaattgtatatcatttgtaaaacgttatt 11252
Query: 343 accatctttacaattttattaatattaattgattgatgtattgaatagttacattacgac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11251 accatctttacaattttattaatattaattgattgatgtattgaatagttacattacgac 11192
Query: 403 aataataaagaagctatatggttcttgagggtatcgccctgggccgcgatttttttctat 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11191 aataataaagaagctatatggttcttgagggtatcgccctgggccgcgatttttttctat 11132
Query: 463 gcatgattatatatttgtataactgtccttgatctgagtactattctgtaatacaaacca 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11131 gcatgattatatatttgtataactgtccttgatctgagtactattctgtaatacaaacca 11072
Query: 523 tacatgcactaaccgataataaatagtcttttcatgaaatatgcttaaaatgttcataaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11071 tacatgcactaaccgataataaatagtcttttcatgaaatatgcttaaaatgttcataaa 11012
Query: 583 ctccgaatgttatgcaggtagatggaatggctcgtactaagtttgcaaacaaacccttat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11011 ctccgaatgttatgcaggtagatggaatggctcgtactaagtttgcaaacaaacccttat 10952
Query: 643 aaaatcctgcaataccattagtatgccagatagatcgtattagagaatttcatttactgt 702
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 10951 aaaatcctgcaataccattagtatgccagatagatcgtattagagaattcattttactgt 10892
Query: 703 tttcattatgttcaagttctgaagggttgttaaattagtttnttataatttgcaacggat 762
||||||||||||| ||||||||||| ||| ||||||||| | | |||| |||||||||||
Sbjct: 10891 tttcattatgttc-agttctgaaggtttg-taaattagtctttaataa-ttgcaacggat 10835
Query: 763 acacagaaactgacataaatcattttttgaaagtgaaattatgccctatggttt 816
|||||| |||||||| |||||| ||||||||||||| |||||| ||||||||||
Sbjct: 10834 acacag-aactgacagaaatca-tttttgaaagtgatattatg-cctatggttt 10784
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8188
Number of Sequences: 1807
Number of extensions: 8188
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)