BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG03FM1.SCF screened BAC_end
(1183 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 494 e-139
>3x_Contig1629
Length = 12481
Score = 494 bits (249), Expect = e-139
Identities = 327/352 (92%), Gaps = 1/352 (0%)
Strand = Plus / Plus
Query: 119 taccatttttgccaacgttcaacataaatttccatctcttctcactcacagtactgtcct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3583 taccatttttgccaacgttcaacataaatttccatctcttctcactcacagtactgtcct 3642
Query: 179 cattccaatgagaggttccgttcatgtcaacagctaatttacgttccgctcgaattggtg 238
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 3643 cattccaatgagaggtttcgttcatgtcaacagctaatttacgtttcgcttgaattggtg 3702
Query: 239 agtccgaattttttttt-caggacgcgaacttctaacattatcatgcctagaaattgatg 297
|||| ||||| | ||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 3703 agtcggaattaaacataacaggaggcgaacttctaacattatgatgcctagaaattgatg 3762
Query: 298 aaaacacctgatctaaaggagttcctggagcataactagggggatggttaagagatctag 357
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3763 aaaacacctgatctaaaggagttcctggagcagaactagggggatggttaagagatctag 3822
Query: 358 cgtcatgaccaccataattacttggatcatccaaatctgcatcctcatcaccaattttcg 417
|||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 3823 tgtcatgaccatcataattacttggatcatccaaatctgcatcctcatcatcagttttcg 3882
Query: 418 aaagngaaaatccgccatccctcttatattctggactgatagatttccaacc 469
|||| |||||| || ||||||||||| ||| ||| |||||||||||| ||||
Sbjct: 3883 aaagtgaaaattcgtcatccctcttagattttggtctgatagatttcgaacc 3934
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,500
Number of Sequences: 1807
Number of extensions: 11500
Number of successful extensions: 155
Number of sequences better than 1.0e-20: 1
length of query: 1183
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1167
effective length of database: 10,329,639
effective search space: 12054688713
effective search space used: 12054688713
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)