BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG04FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1020 1160 0.0
>3x_Contig1020
Length = 4879
Score = 1160 bits (585), Expect = 0.0
Identities = 683/702 (97%), Gaps = 12/702 (1%)
Strand = Plus / Plus
Query: 86 attagactaattacccactctttaggtggtgaagcttatt-tgaactttg-aaggtaacg 143
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2528 attagactaattacccactctttaggtggtgaagcttattatgaactttgcaaggtaacg 2587
Query: 144 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 agtttggtcaccctgaatggttggatttccctaacgttaacaacggcgatagttaccatt 2647
Query: 204 atgctagaaggcatttcaacttggtggatgaccctttgttgagataccaatacttgtatc 263
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2648 atgctagaaggcagttcaacttggtggatgaccctttgttgagataccaatacttgtatc 2707
Query: 264 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2708 agtttgataaggctatgcaaactactgaaaagaattataaatggttgaatacaccacaag 2767
Query: 324 cgtatgtctctttgaaacacgaagttgacaaggtcatcgcattcgaaagaaatggactct 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2768 cgtatgtctctttgaaacacgaagttgacaaggtcatcgcattcgaaagaaatggactct 2827
Query: 384 tgttcatcttcaatttccatccgacagaatccttcacagattatcgtattggagttaatg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2828 tgttcatcttcaatttccatccgacagaatccttcacagattatcgtattggagttaatg 2887
Query: 444 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggtggctgggatc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2888 agccaggttgctaccgtatcgtattgaactcagacaagcatgaatacggtggctgggatc 2947
Query: 504 gtatcgatgagtcccaatccaagtattttactactgatttgaaatggaacgaaagaaaca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2948 gtatcgatgagtcccaatccaagtattttactactgatttgaaatggaacgaaagaaaca 3007
Query: 564 atttcatccangtttacattccaaaccgtaccgcattagttctcgcccttgattcaagag 623
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3008 atttcatccaggtttacattccaaaccgtaccgcattagttctcgcccttgattcaagag 3067
Query: 624 tgaggaatggaaattagccaaataatacaaaaacaactgtataccttattaccaacttaa 683
|||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||
Sbjct: 3068 tgaggaatggaaattagccaaataatacaaaagcaactgtatacctca-taccaac-taa 3125
Query: 684 accaaagacattggacggaaaagaattctcaattnccaaaaaaaaaaaaaaaaaatttag 743
|||||||||| | ||||| |||||| |||||||| | ||||||||||||||||| ||||
Sbjct: 3126 accaaagaca-tagacgg-aaagaa-tctcaattcc--aaaaaaaaaaaaaaaaacttag 3180
Query: 744 gacaccacaccatatgctagcttaaccattccttcaaactat 785
||||||||| ||||||||||| |||||||||| |||||||||
Sbjct: 3181 gacaccaca-catatgctagc-taaccattcc-tcaaactat 3219
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,932
Number of Sequences: 1807
Number of extensions: 19932
Number of successful extensions: 3196
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)