BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG04RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig989 1160 0.0
>3x_Contig989
Length = 4314
Score = 1160 bits (585), Expect = 0.0
Identities = 687/709 (96%), Gaps = 9/709 (1%)
Strand = Plus / Plus
Query: 43 caagcttataaggtgttacattgttggtaatgggacgtcatatattgaaacatgttttcg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1804 caagcttataaggtgttacattgttggtaatgggacgtcatatattgaaacatgttttcg 1863
Query: 103 cggtaggaggaatctactgttcgtttttgacatggggtttattgcaagagcctttgaaca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1864 cggtaggaggaatctactgttcgtttttgacatggggtttattgcaagagcctttgaaca 1923
Query: 163 ctagagtatggccgaactctggctgtacgtttcaagtaccatacatagtcgcattggtac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1924 ctagagtatggccgaactctggctgtacgtttcaagtaccatacatagtcgcattggtac 1983
Query: 223 aggcaacaattgctatgatttgtgggttaatctatataaaatggcagaaacctgtgcttt 282
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1984 aggcaacaattgctatgatttgtgggttaatctatataccctagcagaaacctgtgcttt 2043
Query: 283 ctctatcgaaattttggaccagtcatacaaggg-atatggcgattatttcattatcccag 341
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2044 ctctatcgaaattttggaccagtcatacaagggcatatggcgattatttcattatcccag 2103
Query: 342 gcaatttctgctccgttagctgcttactcgttaagctatgtggatttcttgacttatatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2104 gcaatttctgctccgttagctgcttactcgttaagctatgtggatttcttgtcttatatg 2163
Query: 402 ttggcaaagtcatgcaaacttttaccggtgctgatggtccatttgattgtgtaccgtaca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2164 ttggcaaagtcatgcaaacttttaccggtgctgatggtccatttgattgtgtaccgtaca 2223
Query: 462 ccaattccaagaagtaagaaattagtggtactgttggtaacggttgggataacaatattc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 ccaattccaagaagtaagaaattagtggtactgttggtaacggttgggataacaatattc 2283
Query: 522 actttggatggacataaaccttctatgactgagaatgacgtttctgagagttcttcatct 581
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2284 actttggatggacataaaccttctatgactgagaatgacgtttcttagagttcttcatct 2343
Query: 582 tctttcgttgatgggtttttgggctgctgggtagcagtccttttccttgatgga-taacc 640
|| ||||||||| || ||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct: 2344 tc-ttcgttgattgg-ttttgtgctgctgggtagcagt-cttttccttgatggattaacc 2400
Query: 641 aacgctaaacaagataagctattccagaagggcacttattaagatcactggtgctcatct 700
||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 2401 aacgctaaacaggataagctattccagaaggccactta-taagatcactggtgctcatct 2459
Query: 701 tatgttttgcattaaactttctttctaaattggatggaacgtaatatat 749
||| |||||||||||| ||||| || ||||| ||||||||||||||||
Sbjct: 2460 catg-tttgcattaaac-ttcttcct-aattgtatggaacgtaatatat 2505
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8274
Number of Sequences: 1807
Number of extensions: 8274
Number of successful extensions: 99
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)