BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZG05FM1.SCF screened BAC_end
         (981 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig789                                                          706   0.0  

>3x_Contig789 
          Length = 3508

 Score =  706 bits (356), Expect = 0.0
 Identities = 425/440 (96%), Gaps = 6/440 (1%)
 Strand = Plus / Plus

                                                                       
Query: 86  ttgtttgctttcttccatc-cataagactggagatttttcataattaggaaactgaccga 144
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttgtttgctttcttccatcacataagactggagatttttcataattaggaaactgaccga 301

                                                                       
Query: 145 attcattccagaagaaagagaatcattataataaattttgtgttgcttcatttctattat 204
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 302 attcattccagaagaaagagaatcaagataataaattttgtgttgcttcatttctattat 361

                                                                       
Query: 205 acccaatgtttta-gtgaatcattcaaattgataggaacgaagatcttattaagatctaa 263
           |||||||||   | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acccaatgtccaatgagaatcattcaaattgataggaacgaagatcttattaagatctaa 421

                                                                       
Query: 264 aatatcaaccttctttcttttcatccatcttcttacaccttgatagcctctgtcagctaa 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aatatcaaccttctttcttttcatccatcttcttacaccttgatagcctctgtcagctaa 481

                                                                       
Query: 324 agtagaataaaaaaatgagttaaatgcaacagttttggcagtgttttgttcgatatactt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agtagaataaaaaaatgagttaaatgcaacagttttggcagtgttttgttcgatatactt 541

                                                                       
Query: 384 catgaaaaactcaatgattgtgtcattcaaccaccttctaggggctaatgttttgaaatc 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 542 catgaaaaactcaatgattgtgtcattcaaccaccttctaggggctaatgtcttgaaatc 601

                                                                       
Query: 444 tcgcacagttactttccaacatatactttggatgaaaataacaccgttatcagacctatt 503
           |||||||||||| ||||||||||||| ||||||| ||| |||| ||||||||||||||||
Sbjct: 602 tcgcacagttac-ttccaacatatac-ttggatg-aaagaacagcgttatcagacctatt 658

                               
Query: 504 gaaagttggctttcacttcc 523
           ||||||| ||||||||||||
Sbjct: 659 gaaagtt-gctttcacttcc 677


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,752
Number of Sequences: 1807
Number of extensions: 11752
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)