BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZG05FM1.SCF screened BAC_end (981 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig789 706 0.0 >3x_Contig789 Length = 3508 Score = 706 bits (356), Expect = 0.0 Identities = 425/440 (96%), Gaps = 6/440 (1%) Strand = Plus / Plus Query: 86 ttgtttgctttcttccatc-cataagactggagatttttcataattaggaaactgaccga 144 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 242 ttgtttgctttcttccatcacataagactggagatttttcataattaggaaactgaccga 301 Query: 145 attcattccagaagaaagagaatcattataataaattttgtgttgcttcatttctattat 204 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 302 attcattccagaagaaagagaatcaagataataaattttgtgttgcttcatttctattat 361 Query: 205 acccaatgtttta-gtgaatcattcaaattgataggaacgaagatcttattaagatctaa 263 ||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 acccaatgtccaatgagaatcattcaaattgataggaacgaagatcttattaagatctaa 421 Query: 264 aatatcaaccttctttcttttcatccatcttcttacaccttgatagcctctgtcagctaa 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 aatatcaaccttctttcttttcatccatcttcttacaccttgatagcctctgtcagctaa 481 Query: 324 agtagaataaaaaaatgagttaaatgcaacagttttggcagtgttttgttcgatatactt 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 agtagaataaaaaaatgagttaaatgcaacagttttggcagtgttttgttcgatatactt 541 Query: 384 catgaaaaactcaatgattgtgtcattcaaccaccttctaggggctaatgttttgaaatc 443 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 542 catgaaaaactcaatgattgtgtcattcaaccaccttctaggggctaatgtcttgaaatc 601 Query: 444 tcgcacagttactttccaacatatactttggatgaaaataacaccgttatcagacctatt 503 |||||||||||| ||||||||||||| ||||||| ||| |||| |||||||||||||||| Sbjct: 602 tcgcacagttac-ttccaacatatac-ttggatg-aaagaacagcgttatcagacctatt 658 Query: 504 gaaagttggctttcacttcc 523 ||||||| |||||||||||| Sbjct: 659 gaaagtt-gctttcacttcc 677 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,752 Number of Sequences: 1807 Number of extensions: 11752 Number of successful extensions: 96 Number of sequences better than 1.0e-20: 1 length of query: 981 length of database: 10,358,551 effective HSP length: 16 effective length of query: 965 effective length of database: 10,329,639 effective search space: 9968101635 effective search space used: 9968101635 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)