BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG05RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1092 0.0
>3x_Contig1768
Length = 25668
Score = 1092 bits (551), Expect = 0.0
Identities = 626/643 (97%), Gaps = 6/643 (0%)
Strand = Plus / Minus
Query: 43 cttgtggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24681 cttgtggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtc 24622
Query: 103 ttttgtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtgga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24621 ttttgtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtgga 24562
Query: 163 attttcatcatcagattcactatcacttcccccaaaagcaggacgttttctctaacactg 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24561 attttcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactg 24502
Query: 223 tccccttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatcctt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24501 tccccttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatcctt 24442
Query: 283 ttgcttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24441 ttgcttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtct 24382
Query: 343 ctcttccttagcatctacagaaacagatgctgtaacatcattattcagtttctgtttttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24381 ctcttccttagcatctacagaaacagatgctgtaacatcattattcagtttctgtttttt 24322
Query: 403 ccacttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24321 ccacttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcac 24262
Query: 463 cttcgtaatttaattgggtcttttttcttctttctgtgtgctatctttc-agtattaatc 521
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24261 cttcgtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatc 24202
Query: 522 ctgaatggttttaaaggtttgttaattcaatattattagtatttttgattttgaagaaaa 581
|||||||||||||| | ||||||||||||||||||| ||| ||||||| |||||| |||
Sbjct: 24201 ctgaatggttttaaggttttgttaattcaatattataggta-ttttgatattgaaggaaa 24143
Query: 582 tcctttccaaatgggtatttttaaactacttaatgaagatgggaaaacaccctacctagt 641
||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||||
Sbjct: 24142 tcctttccaaatgggta-ttttaaactactaaatgaagatggg-aaacacgctacctagt 24085
Query: 642 tcctttgcattcagttcatttgacaattggtctatattctttg 684
| | ||||||||||||||| |||||||| ||||||||||||||
Sbjct: 24084 t-cattgcattcagttcatatgacaatt-gtctatattctttg 24044
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,837
Number of Sequences: 1807
Number of extensions: 11837
Number of successful extensions: 316
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)