BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG07RM1.SCF screened BAC_end
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 1505 0.0
>3x_Contig1627
Length = 15708
Score = 1505 bits (759), Expect = 0.0
Identities = 823/837 (98%), Gaps = 7/837 (0%)
Strand = Plus / Minus
Query: 49 gtgctaattgtttgaattgagagtctcccagcacaaaattttctctcaaagtctgctcat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 gtgctaattgtttgaattgagagtctcccagcacaaaattttctctcaaagtctgctcat 2384
Query: 109 cgttcaattcagtgaaaacactggaacgactgaaatcgtcagctatggcttgcattgtaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 cgttcaattcagtgaaaacactggaacgactgaaatcgtcagctatggcttgcattgtaa 2324
Query: 169 taggatgcgtatataaattggataaatcttcctcgtttcaatttatgacaaatttagtcc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 taggatgcgtatataaattggataaatcttcctcgtttcaatttatgacaaatttagtcc 2264
Query: 229 aaagttgattcaagtagatgctaaatcctgattgtatattatgacttctttcttcttctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 aaagttgattcaagtagatgctaaatcctgattgtatattatgacttctttcttcttctt 2204
Query: 289 taactgtacccttttgccactcaaggctctaattgtttaagttcatataatctcagaatg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 taactgtacccttttgccactcaaggctctaattgtttaagttcatataatctcagaatg 2144
Query: 349 aaggttgtaattcgggtttgatatcaacgattgtatgggactgtcaaatgtgtagggtaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 aaggttgtaattcgggtttgatatcaacgattgtatgggactgtcaaatgtgtagggtaa 2084
Query: 409 cgatacatcatccgtacattctctaaagtatccagaattccaaattcatggtgtacggat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 cgatacatcatccgtacattctctaaagtatccagaattccaaattcatggtgtacggat 2024
Query: 469 ggttaaattaaaagtgtgtacatgatattattactatatagggttatttagtccgtgaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 ggttaaattaaaagtgtgtacatgatattattactatatagggttatttagtccgtgaga 1964
Query: 529 ctcataactcgctgtgcggtaagggcgatgagagacatcatctaatacgacaatataatt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 ctcataactcgctgtgcggtaagggcgatgagagacatcatctaatacgacaatataatt 1904
Query: 589 cccgtccttggtgatcatttggttctgctactgcgatctttgggcgacaacgcaactctt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 cccgtccttggtgatcatttggttctgctactgcgatctttgggcgacaacgcaactctt 1844
Query: 649 tttttttgtttggagctttcgcctagtgaaaaattcatgataattcccaatggatggaag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 tttttttgtttggagctttcgcctagtgaaaaattcatgataattcccaatggatggaag 1784
Query: 709 aacagcttgacctagggactaagttacaggtttgatgtangatttttttttcattgag-- 766
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1783 aacagcttgacctagggactaagttacaggtttgatgtagga-ttttttttcattgaggt 1725
Query: 767 tttttaacattggattcactattcgtttaagtacatctattacatattttaaagtatttc 826
|||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||
Sbjct: 1724 ttttcaacattggattcactatacgtttaggtacatctattacatatttaaaagta-ttc 1666
Query: 827 tcgtatttagtgggctatttcttttattatttggagggttttatttccgctgtacac 883
||||| ||||||| ||||||||||||||||||| | ||||||| |||||||||||||
Sbjct: 1665 tcgta-ttagtggtctatttcttttattatttgta-ggtttta-ttccgctgtacac 1612
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8837
Number of Sequences: 1807
Number of extensions: 8837
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)