BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZG08FM1.SCF screened BAC_end (1000 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1377 775 0.0 >3x_Contig1377 Length = 8397 Score = 775 bits (391), Expect = 0.0 Identities = 427/439 (97%) Strand = Plus / Minus Query: 85 tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgtgatttgcttggta 144 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1171 tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgttatttgcttggta 1112 Query: 145 acattggtttcccgtcgtgtctgtgcgtgtgtgtatatcggtcattgtctgatttcaata 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 acattggtttcccgtcgtgtctgtgcgtgtgtgtatatcggtcattgtctgatttcaata 1052 Query: 205 acttataaacatttttttggaaaaatcgagactacgcggactctgaacagcggaggagtt 264 ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1051 acttataaacaaagttagggaaaaatcgagactacgcggactctgaacagcggaggagtt 992 Query: 265 ctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaatagt 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 991 ctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaatagt 932 Query: 325 gtatctatcagattccagcccttgtgttatcaataatcagcttgagcatttattttcctt 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 gtatctatcagattccagcccttgtgttatcaataatcagcttgagcatttattttcctt 872 Query: 385 ttgtccttatctggtcattgacggagacttcagagttctggactggttttactcataact 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 871 ttgtccttatctggtcattgacggagacttcagagttctggactggttttactcataact 812 Query: 445 ccgaatgccatgaaccaataagaggaggagccagacgtaactgcaagtttcaacagaaat 504 ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| Sbjct: 811 ccgaatgccatgaacaataaagaggaggagcaagacgtaactgcaagtttcaacagaaat 752 Query: 505 gacccagatttagcatcct 523 || |||||| ||||||||| Sbjct: 751 gaaccagatatagcatcct 733 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,115 Number of Sequences: 1807 Number of extensions: 12115 Number of successful extensions: 92 Number of sequences better than 1.0e-20: 1 length of query: 1000 length of database: 10,358,551 effective HSP length: 16 effective length of query: 984 effective length of database: 10,329,639 effective search space: 10164364776 effective search space used: 10164364776 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)