BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZG08FM1.SCF screened BAC_end
         (1000 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1377                                                         775   0.0  

>3x_Contig1377 
          Length = 8397

 Score =  775 bits (391), Expect = 0.0
 Identities = 427/439 (97%)
 Strand = Plus / Minus

                                                                        
Query: 85   tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgtgatttgcttggta 144
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1171 tacaaaaagagtagtagaaaatatgggaagaggttgaatattactgttatttgcttggta 1112

                                                                        
Query: 145  acattggtttcccgtcgtgtctgtgcgtgtgtgtatatcggtcattgtctgatttcaata 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 acattggtttcccgtcgtgtctgtgcgtgtgtgtatatcggtcattgtctgatttcaata 1052

                                                                        
Query: 205  acttataaacatttttttggaaaaatcgagactacgcggactctgaacagcggaggagtt 264
            |||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 acttataaacaaagttagggaaaaatcgagactacgcggactctgaacagcggaggagtt 992

                                                                        
Query: 265  ctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaatagt 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  ctacacatcaatatacggacacaaatgtacttctagaaagtaccttgctataacaatagt 932

                                                                        
Query: 325  gtatctatcagattccagcccttgtgttatcaataatcagcttgagcatttattttcctt 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  gtatctatcagattccagcccttgtgttatcaataatcagcttgagcatttattttcctt 872

                                                                        
Query: 385  ttgtccttatctggtcattgacggagacttcagagttctggactggttttactcataact 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  ttgtccttatctggtcattgacggagacttcagagttctggactggttttactcataact 812

                                                                        
Query: 445  ccgaatgccatgaaccaataagaggaggagccagacgtaactgcaagtttcaacagaaat 504
            ||||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 811  ccgaatgccatgaacaataaagaggaggagcaagacgtaactgcaagtttcaacagaaat 752

                               
Query: 505  gacccagatttagcatcct 523
            || |||||| |||||||||
Sbjct: 751  gaaccagatatagcatcct 733


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,115
Number of Sequences: 1807
Number of extensions: 12115
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)