BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG08RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 973 0.0
>3x_Contig1577
Length = 10627
Score = 973 bits (491), Expect = 0.0
Identities = 539/550 (98%), Gaps = 5/550 (0%)
Strand = Plus / Minus
Query: 36 ctttttatgctcca-tgcagtgaaacctgaaacagaggaaatgtagttttttagaatatc 94
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8279 ctttttatgctccaatgcagtgaaacctgaaacagaggaaatgtagttttttagaatatc 8220
Query: 95 ttgaaattgcatcgggtcatactgttcctgggcttttaagttgcatttgtcagtgttcaa 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8219 ttgaaattgcatcgggtcatactgttcctgggcttttaagttgcatttgtcagtgttcaa 8160
Query: 155 ctgtcccaatgattttttctctgattcaatgtgatactgagtttgttgcaattgctgttg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8159 ctgtcccaatgattttttctctgattcaatgtgatactgagtttgttgcaattgctgttg 8100
Query: 215 agccttcgctagtttcactctcaaatcttgtaattcaacctgggagttaacaacaaaatg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8099 agccttcgctagtttcactctcaaatcttgtaattcaacctgggagttaacaacaaaatg 8040
Query: 275 ttcatcatcgtgccatacactcgaaggttcgtatagaaaatctttgggttccttccatga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8039 ttcatcatcgtgccatacactcgaaggttcgtatagaaaatctttgggttccttccatga 7980
Query: 335 tttcatgttatgctttatgaacattgacgtgtccaaataaggtttatttttggctatgac 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7979 tttcatgttatgctttatgaacattgacgtgtccaaataaggtttatttttggctatgac 7920
Query: 395 tgaatcagctgcatccaatctcgaatcaattgttttattcaattctctctctaagacacc 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7919 tgaatcagctgcatccaatctcgaatcaattgttttattcaattctctctctaagacacc 7860
Query: 455 tgctttattccatattatatttaacatggcagccctcgactcgttgatgtcttgaaagat 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7859 tgctttattccatattatatttaacatggcagccctcgactcgttgatgtcttgaaggat 7800
Query: 515 atctaagatctttggcacatctttggaaaaaagttttgttccttgacttctattggcttt 574
||||||||||| ||||||||||| | ||||||| || |||||||| ||||||||| ||
Sbjct: 7799 atctaagatctctggcacatctt--ggaaaaagtatttgtccttgac-tctattggc-tt 7744
Query: 575 ggttgatttt 584
||||||||||
Sbjct: 7743 ggttgatttt 7734
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,239
Number of Sequences: 1807
Number of extensions: 12239
Number of successful extensions: 147
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)