BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG09RM1.SCF screened BAC_end
(1229 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 692 0.0
>3x_Contig1776
Length = 26138
Score = 692 bits (349), Expect = 0.0
Identities = 377/387 (97%)
Strand = Plus / Minus
Query: 72 aagctntcctgtattcgcatgttctgcatacttttccatttcattcatttcttttcaatt 131
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24340 aagctttcctgtattcgcatgttctgcatacttttccatttcattcatttcttttcaatt 24281
Query: 132 gatatcaaattgatgaagttncagaatgaaattgatatccacgggagatgacatttcatt 191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 24280 gatatcaaattgatgaagtttcagaatgaaattgatatccacgggagatgacatttcatt 24221
Query: 192 acccgaatgtgcgacaaacatccttgtttctcacgtgacttgacctccagatggatacag 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24220 acccgaatgtgcgacaaacatccttgtttctcacgtgacttgacctccagatggagacag 24161
Query: 252 ctctccgttgtacatagcaatcgatcttgcatccaccgttaacatattgtggtgcagtaa 311
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24160 ctctccgttgtacatagcaatcgatcttgcagccaccgttaacatattgtggtgcagtaa 24101
Query: 312 ttacctgcagagcgacttcaacctaaatctgaaacagggacgttgctaggaatgttcctt 371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24100 ttacctgcagagcgacttcaacctaaatctgaaacagggacgttgctaggaatgtttttt 24041
Query: 372 aaaaggaagcaaacccttaaacagtgtcaagtgcttgtttgatttttacttgcttgtttt 431
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24040 aaaaggaagcaaacccttaaacagtgtcaagtgcttgtttgttttttacttgcttgtttt 23981
Query: 432 atttttcaattgtacttgattttagtt 458
||||| |||||| |||||||||||||
Sbjct: 23980 attttccaattgagcttgattttagtt 23954
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,855
Number of Sequences: 1807
Number of extensions: 10855
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 1229
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1213
effective length of database: 10,329,639
effective search space: 12529852107
effective search space used: 12529852107
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)