BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG10FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1037 0.0
3x_Contig38 170 3e-42
>3x_Contig1517
Length = 8289
Score = 1037 bits (523), Expect = 0.0
Identities = 592/611 (96%), Gaps = 3/611 (0%)
Strand = Plus / Minus
Query: 84 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4607 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 4548
Query: 144 actgcagcagattccagagttgatctggcaccgaatctcatgcatagaaatgatgagttt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4547 actgcagcagattccagagttgatctggcaccgaatctcatgcatagaaatgatgagttt 4488
Query: 204 gatcacaatgttttcatggacattgacatggatctcgatacagatccgtacgcggatgca 263
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4487 gatcacaatgcggacatggacattgacatggatctcgatacagatccgtacgcggatgca 4428
Query: 264 gacatggacatagagctggatgaatagtccttagacatgtttgtgaagtattattatcat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4427 gacatggacatagagctggatgaatagtccttagacatgtttgtgaagtattattatcat 4368
Query: 324 tttgatagaagtattaacacctatagagagagtatgtaaacaactgatttttacttgttg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4367 tttgatagaagtattaacacctatagagagagtatgtaaacaactgatttttacttgttg 4308
Query: 384 aactgaattaatgtgaaagaatataagagtgttaatgtcaaaattatgttgaagtattac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4307 aactgaattaatgtgaaagaatataagagtgttaatgtcaaaattatgttgaagtattac 4248
Query: 444 aatgcgatgtacagtacatcattatgataagcatgaaagccatcagtggatagaaattga 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4247 aatgcgatgtacagtacatcattatgataagcatgaaagccatcagtggatagaaattga 4188
Query: 504 attttgaccaccttggggttctttttgtattatttattatgacgataaaattttgcaaca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4187 attttgaccaccttggggttctttttgtattatttattatgacgataaaattttgcaaca 4128
Query: 564 aataacttagctgtcatcgacaaaagatcttgcgtttctttttgaataaaacccggtact 623
||||||||||||||||||||| |||||||||||||||| | |||||| | | ||||||||
Sbjct: 4127 aataacttagctgtcatcgac-aaagatcttgcgtttc-tcttgaattagaaccggtact 4070
Query: 624 tttgcataattagtgacttgagtgccaatatattttccgttttttgatgtccaccttaaa 683
| ||||| | ||||||||||||||||||||| | |||| |||||||||| || ||||||
Sbjct: 4069 tctgcatcagtagtgacttgagtgccaatatcatctccg-tttttgatgtacaacttaaa 4011
Query: 684 agaatctgcgt 694
|||||||||||
Sbjct: 4010 agaatctgcgt 4000
>3x_Contig38
Length = 925
Score = 170 bits (86), Expect = 3e-42
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 84 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 31
Query: 144 actgcagcagattccagagttgatct 169
||||||||||||||||||||||||||
Sbjct: 30 actgcagcagattccagagttgatct 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7416
Number of Sequences: 1807
Number of extensions: 7416
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)