BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG10RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1356 0.0
>3x_Contig1521
Length = 8057
Score = 1356 bits (684), Expect = 0.0
Identities = 782/804 (97%), Gaps = 8/804 (0%)
Strand = Plus / Plus
Query: 36 gctttataatggtaatccagaatgcattggaagctaaattgaaagaaaagataggttatc 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5977 gctttataatggtaatccagaatgcattggaagctaaattgaaagaaaagataggttatc 6036
Query: 96 atagttctgatggtcaatcgctcttggaaattaccaagaaattaagatcatcgatcgtac 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6037 atagttctgatggtcaatcgctcttggaaattaccaagaaattaagatcatcgatcgtac 6096
Query: 156 aagatttggatcttctacgagtgaacaaccatgggacggacttcccaaaagcatttctta 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6097 aagatttggatcttctacgagtgaacaaccatgggacggacttcccaaaagcatttctta 6156
Query: 216 aagtagtttggcaccagctattggaaaagcacatggttcctggacctaaggacactatca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6157 aagtagtttggcaccagctattggaaaagcacatggttcctggacctaaggacactatca 6216
Query: 276 taagattgccgagtgtgacgcaattcgaggaagagacaattctatcttcttacgtcaaag 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217 taagattgccgagtgtgacgcaattcgaggaagagacaattctatcttcttacgtcaaag 6276
Query: 336 atgttgatttagagataatcgagaatagtccagtaggcgctttgctagagctgaaggatg 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6277 atgttgatttagagataatcgagaatagtccagtaggcgctttgctagagctgaaggatg 6336
Query: 396 gaaagggtttaaaagatatgatagacgggattctatcgaatagggaaagtgagcaaacaa 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6337 gaaagggtttaaaagatatgatagacgggattctatcgaatagggaaagtgagcaaacaa 6396
Query: 456 agtttctcaaagatttaaaattatcagagcaatgcagaatgaagagcctgtcgtatgaaa 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6397 agtttctcaaagatttaaaattatcagagcaatgcagaatgaagagcctgtcgtatgaaa 6456
Query: 516 tgaatttctatatcaatattgaagataaacagggaaaccttgattcatgtataagtcaag 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6457 tgaatttctatatcaatattgaagataaacagggaaaccttgattcatgtataagtcaag 6516
Query: 576 aatttgataacattggcttatctgattcagggcaat-acagtgatagtacattattcgaa 634
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 6517 aatttgataacattggcttatctgattca-ggcaataacagtgatagtacattattcgaa 6575
Query: 635 actgtacatactagaattgcccttacgctaaaacatttgaaagaagtgaaggtaacatta 694
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6576 actgtacatactagattgccccttacgctaaaacatttgaaagaagtgaaggtaacatta 6635
Query: 695 ttacctt-agttaaatttgacaaacaatgggaaaatgcttcattttgactccaattt-aa 752
||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct: 6636 ttaccttcagttaaatttgacaaacaatggg-aaatgcttcattatgactccaatttaaa 6694
Query: 753 ggaaaagatgtacttcgcatggtatttaattggttcagcttaagccacctttttaaaaaa 812
||||||||||||| ||||||||||||| || | | ||| |||||||||| || |||||
Sbjct: 6695 ggaaaagatgtac-tcgcatggtatttcatcgctcaagc-taagccacctattagaaaaa 6752
Query: 813 ggttaaaccgaaaatccgtaagaa 836
| |||| ||||||||||||||||
Sbjct: 6753 tg-taaaacgaaaatccgtaagaa 6775
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8127
Number of Sequences: 1807
Number of extensions: 8127
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)