BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG11FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1795 809 0.0
>3x_Contig1795
Length = 38452
Score = 809 bits (408), Expect = 0.0
Identities = 475/497 (95%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 89 ttcttccctttatatataaagaagaaaaattttattaaacaggtcgtaaatatcttccca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32177 ttcttccctttatatataaagaagaaaaattttattaaacaggtcgtaaatatcttccca 32118
Query: 149 gtccgggttacgaaaagtgatttttccaacaacttatggctatgagagtggaccctcagt 208
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 32117 gtccgggttacgaaaagtgacctttccaacaacttagggctatgagagtggaccctcagt 32058
Query: 209 aacttatttcctggnattaanangaagggtcacttgtaaattgcctcaccttgaaaatga 268
||||||| ||| || | || | |||||||||| ||||||||||||||||||||||||||
Sbjct: 32057 aacttatatccgggtaagaatatgaagggtcacgtgtaaattgcctcaccttgaaaatga 31998
Query: 269 acagaatgtatgtcaacagtatccatatatacagacagatacagatatgttcagccgttt 328
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 31997 acagaatgtatgtcaacagtatccatagatacagacagatacagatatgttcagccgttt 31938
Query: 329 tccgttacccggactttatatatttctagttgttgaccaaagtcggagccgctttcgtat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31937 tccgttacccggactttatatatttctagttgttgaccaaagtcggagccgctttcgtat 31878
Query: 389 catcttaaaaagaaactggtactgaaactgactgcgaaatgggttctgcctatatctcga 448
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 31877 catcttaaaaagaaactggtactgaaactgactgtgaaatgggttctgcctatatctcga 31818
Query: 449 aatgaatccaaggtaaatttatcagtgttgaacctgccattctgtgaagtcatttcatgg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31817 aatgaatccaaggtaaatttatcagtgttgaacctgccattctgtgaagtcatttcatgg 31758
Query: 509 ttatatcctagggtgatagcgtatgtatttgcattggtaagcaacgtgaccagcaaaatg 568
||||||||||||||||||| ||||||||||| |||| ||||| |||||| ||||||| ||
Sbjct: 31757 ttatatcctagggtgatagtgtatgtatttgtattgctaagc-acgtgatcagcaaattg 31699
Query: 569 caaggaaagggagagac 585
|||| || ||||||||
Sbjct: 31698 taaggtaatggagagac 31682
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,562
Number of Sequences: 1807
Number of extensions: 12562
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)