BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG11RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 1029 0.0
>3x_Contig1354
Length = 7778
Score = 1029 bits (519), Expect = 0.0
Identities = 532/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Minus
Query: 48 aaaaccctgtgcatggaacggtggcaaaaacccgcaaaaagctttgagaagaactcccca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6691 aaaaccctgtgcatggaacggtggcaaaaacccgcaaaaagctttgagaagaactcccca 6632
Query: 108 tgcccagaacttctaagcacagatttttgctgagaaaaaaagaaccaactcttcaacgca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631 tgcccagaacttctaagcacagatttttgctgagaaaaaaagaaccaactcttcaacgca 6572
Query: 168 gcacagaaattaaagaagagcgcttgaagtgaggggcaccgagttcatctcggtggtgcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6571 gcacagaaattaaagaagagcgcttgaagtgaggggcaccgagttcatctcggtggtgcc 6512
Query: 228 ttagatcatcaacagttcctcaagagtacgaaatgtcttgctggatcggccgattgtgaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6511 ttagatcatcaacagttcctcaagagtacgaaatgtcttgctggatcggccgattgtgaa 6452
Query: 288 ttatggctggtttcactctgtttccagtttggagtggcagatgcaagaccagatttaaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6451 ttatggctggtttcactctgtttccagtttggagtggcagatgcaagaccagatttaaat 6392
Query: 348 atccaatatatgcatgagtgatgttgaaaagggacacgggagttaaggtgatcgaaaggc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6391 atccaatatatgcatgagtgatgttgaaaagggacacgggagttaaggtgatcgaaaggc 6332
Query: 408 gttttactctcaggtgtggtacgagagattgcgtattgccgtgcgccagtttttcggtat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6331 gttttactctcaggtgtggtacgagagattgcgtattgccgtgcgccagtttttcggtat 6272
Query: 468 gtaaattgtgttttctattctagcctttcgttttattttcctaatctggctcttctggtc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6271 gtaaattgtgttttctattctagcctttcgttttattttcctaatctggctcttctggtc 6212
Query: 528 tcagcccgatgtctctttcctttttcccttccgacccacccacccaattatcaat 582
||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct: 6211 tcagcccgatgtctc-ttcctttttcccttccgacccacccacccactcatcaat 6158
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,905
Number of Sequences: 1807
Number of extensions: 19905
Number of successful extensions: 2314
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)