BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZG12RM1.SCF screened BAC_end
(1179 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1237 599 e-171
>3x_Contig1237
Length = 6632
Score = 599 bits (302), Expect = e-171
Identities = 370/393 (94%), Gaps = 1/393 (0%)
Strand = Plus / Minus
Query: 76 aactatcgngaatnacacggnnngaccggctatcatccgcaagnaatatccaagcatgcc 135
|||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 1787 aactatcgtgaattacacggtt-gaccggctatcatccgcaagtaatatccaagcatgcc 1729
Query: 136 tagaatcagaactcatgcgaccaaaaaggcccccgaagggttcgacaaaatttctcccac 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1728 tagaatcagaactcatgcgaccaaaaaggcccccgaagggttcgacaaaatttctcccac 1669
Query: 196 tctaaacgaatttgctatccaattgaaggaagcggaaagcgaataggtttttaaactctc 255
||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 1668 tctaaacgaatttgctatccaattgaaggaagcggaaagcgaaaagggttcgaaactctc 1609
Query: 256 tacaaagaacacacaatctacgtggcaagtgttccaaatccaccacgaacgaaccacata 315
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 1608 tacaaagaacacagaatctacgtggcaagtgttccaaatccaccacgaacgaagcagata 1549
Query: 316 cgtctacaatttgtactacaagcgcacagccatatctagagagctttacgagaggctact 375
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 1548 cgtctacaatttgttctacaagcgcaaagccatatctagagagctttacgagtggctact 1489
Query: 376 acgtgaaaaattcgccgataaacaattgatagccaaatggaagaagaatgggtacgaaaa 435
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1488 acgtgaaaaatacgccgataaacaattgatagccaaatggaagaagaaggggtacgaaaa 1429
Query: 436 tctatgctgactacaatgcatacacccaaatga 468
|||||||| ||||||||||||| |||||||
Sbjct: 1428 actatgctgtttacaatgcatacagtcaaatga 1396
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,744
Number of Sequences: 1807
Number of extensions: 19744
Number of successful extensions: 319
Number of sequences better than 1.0e-20: 1
length of query: 1179
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1163
effective length of database: 10,329,639
effective search space: 12013370157
effective search space used: 12013370157
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)