BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH01RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1582 0.0
>3x_Contig1718
Length = 19496
Score = 1582 bits (798), Expect = 0.0
Identities = 836/845 (98%), Gaps = 3/845 (0%)
Strand = Plus / Plus
Query: 48 agaggagatgactcagatcctaacacaccaagctccaagatgtcatgctctatggaagag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 agaggagatgactcagatcctaacacaccaagctccaagatgtcatgctctatggaagag 5561
Query: 108 gatgccacatccgcatcttcaaagaatgacccagtttacgggaaagtgagatcaggattt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5562 gatgccacatccgcatcttcaaagaatgacccagtttacgggaaagtgagatcaggattt 5621
Query: 168 cagcttttcaaatctaaacaacctatatttctagactacggtggagtgctaccgaatttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5622 cagcttttcaaatctaaacaacctatatttctagactacggtggagtgctaccgaatttt 5681
Query: 228 gagttggcatatgagacctggggcactttaaatgaagataaatctaatgctattttaata 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5682 gagttggcatatgagacctggggcactttaaatgaagataaatctaatgctattttaata 5741
Query: 288 catacaggacttagtgcatcgtcacatgcacattcctcatcgtcgaacgaaaaacctggc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5742 catacaggacttagtgcatcgtcacatgcacattcctcatcgtcgaacgaaaaacctggc 5801
Query: 348 tggtgggaagacttcatagggcctggaaattcaatcctagacactgataagtggttcatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5802 tggtgggaagacttcatagggcctggaaattcaatcctagacactgataagtggttcatt 5861
Query: 408 atctgtacaaatgtattaggagggtgctacggatctacaggcccttcgtctctagatcct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5862 atctgtacaaatgtattaggagggtgctacggatctacaggcccttcgtctctagatcct 5921
Query: 468 ggagacgggaaaccgtatgcaacgaggttcccaatgctctcaattcaggatatgatcaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5922 ggagacgggaaaccgtatgcaacgaggttcccaatgctctcaattcaggatatgatcaga 5981
Query: 528 gctcagaagaggttaattgactgcttcggaattaccaaattgaaagcatcagttggaagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5982 gctcagaagaggttaattgactgcttcggaattaccaaattgaaagcatcagttggaagt 6041
Query: 588 tccatggggggaatgcaatctttggcttatggtcaactatttccagattcagtggaaaaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6042 tccatggggggaatgcaatctttggcttatggtcaactatttccagattcagtggaaaaa 6101
Query: 648 attgtttctgtctcagcatgcgcgaggtctcatccatcatctatagcaatgagacatgca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6102 attgtttctgtctcagcatgcgcgaggtctcatccatcatctatagcaatgagacatgca 6161
Query: 708 cagagacaggtactaatggcagatcccaattggaaaagaggattttattatncaagtgaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6162 cagagacaggtactaatggcagatcccaattggaaaagaggattttattatccaagtgaa 6221
Query: 768 gagcatccggatagaatacctcctcatgtcggcatgaaattagcaagag-aatagcaact 826
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6222 gagcatccggatagaatacctcctcatgtcggcatgaaattagcaagagaaatagcaact 6281
Query: 827 gtcacttatagatcaagccccagaatgggaatcaagggttcgggaccataagattagatg 886
|||||||||||||| || ||||||||||||||||| ||||||| || |||||||||||
Sbjct: 6282 gtcacttatagatc-aggcccagaatgggaatcaa-ggttcggaacagaaagattagatg 6339
Query: 887 atgac 891
|||||
Sbjct: 6340 atgac 6344
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5028
Number of Sequences: 1807
Number of extensions: 5028
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)