BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH02FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1621 1407 0.0
>3x_Contig1621
Length = 10398
Score = 1407 bits (710), Expect = 0.0
Identities = 730/734 (99%), Gaps = 2/734 (0%)
Strand = Plus / Plus
Query: 85 ctaagttgcaacagaaatatgatgcatatcaggaatctcaaaagaaaaggcgatatagtg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5100 ctaagttgcaacagaaatatgatgcatatcaggaatctcaaaagaaaaggcgatatagtg 5159
Query: 145 ttgatttcgatgcaacgcccgacgtgcctataggagatgaggacgatgttgatataatat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5160 ttgatttcgatgcaacgcccgacgtgcctataggagatgaggacgatgttgatataatat 5219
Query: 205 ccaatgttgaagcaattaatgacaacgattctttgaaggagctccgccaaaggcttatgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5220 ccaatgttgaagcaattaatgacaacgattctttgaaggagctccgccaaaggcttatgg 5279
Query: 265 gtaaaagaagggacagcgctgatacggagggtgaatcatttgacaaacaaatgcaaattc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5280 gtaaaagaagggacagcgctgatacggagggtgaatcatttgacaaacaaatgcaaattc 5339
Query: 325 aggatgatcttcagaaggaactggttgaagacatgtcccagctagtttcaggcttaagac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5340 aggatgatcttcagaaggaactggttgaagacatgtcccagctagtttcaggcttaagac 5399
Query: 385 aaggtgcggaagctttccagaatgctatcgaacacgactctactgttcttaaggcagcag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5400 aaggtgcggaagctttccagaatgctatcgaacacgactctactgttcttaaggcagcag 5459
Query: 445 aaatcggattgcatgttacttctaagagcctttcttcactcggatccagattgaaaaagt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5460 aaatcggattgcatgttacttctaagagcctttcttcactcggatccagattgaaaaagt 5519
Query: 505 atcacaatgaaaaaattggatttttaatgaagttaggacttttatcgtttattataattg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5520 atcacaatgaaaaaattggatttttaatgaagttaggacttttatcgtttattataattg 5579
Query: 565 gtctattggtcacctatcttgtaataaaagtatttccagatttatgagtgtcttccgcta 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5580 gtctattggtcacctatcttgtaataaaagtatttccagatttatgagtgtcttccgcta 5639
Query: 625 aaatctccaagatttagataaaggctctgcttcactcaaaagcttcaaagtacaaaatag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5640 aaatctccaagatttagataaaggctctgcttcactcaaaagcttcaaagtacaaaatag 5699
Query: 685 acttatgaatattcgatgaaattaattgataccgtttccacttatcgaatagattgattc 744
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5700 actcatgaatattcgatgaaattaattgataccgtttccacttatcgaatagattgattc 5759
Query: 745 tattgattgccttatctataattgcatattatacacttgtttaaaaattgaccaggcact 804
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 5760 tattgattgtcttatctataattgcatattatacacttgttt-aaaattga-caggcact 5817
Query: 805 tatattgttatagg 818
||||||||||||||
Sbjct: 5818 tatattgttatagg 5831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7093
Number of Sequences: 1807
Number of extensions: 7093
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)