BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZH02RM1.SCF screened BAC_end
         (966 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1676                                                        1287   0.0  

>3x_Contig1676 
          Length = 15800

 Score = 1287 bits (649), Expect = 0.0
 Identities = 703/716 (98%), Gaps = 4/716 (0%)
 Strand = Plus / Plus

                                                                         
Query: 51    gcttgataatacaaaatttccagatctcttggtagtacctatatatgccaatcttcctca 110
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10165 gcttgataatacaaaatttccagatctcttggtagtacctatatatgccaatcttcctca 10224

                                                                         
Query: 111   agaacaacaatccaaaatttttgaacctacaccgaagaactgcagaaaagtagtgcttgc 170
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10225 agaacaacaatccaaaatttttgaacctacaccgaagaactgcagaaaagtagtgcttgc 10284

                                                                         
Query: 171   gacaaatattgcagagacatcgttaacaattgacggcataaagttcgtggtatattcttt 230
             |||||||||||||||||||||||||||||||||||||||||||||||||||| || |   
Sbjct: 10285 gacaaatattgcagagacatcgttaacaattgacggcataaagttcgtggtagatccagg 10344

                                                                         
Query: 231   ttttgtgaaggaacaatcctattcaggaggagtttcaaagctagtgacagttccatgttc 290
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10345 ttttgtgaaggaacaatcctattcaggaggagtttcaaagctagtgacagttccatgttc 10404

                                                                         
Query: 291   tagggcatctgttgaccagagagcagggagagcagggagattgggtccaggcaaatgttt 350
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10405 tagggcatctgttgaccagagagcagggagagcagggagattgggtccaggcaaatgttt 10464

                                                                         
Query: 351   tagattatttacaaaatggtcttactacaatgagcttgaaaaagtaccaaagccagagat 410
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 tagattatttacaaaatggtcttactacaatgagcttgaaaaagtaccaaagccagagat 10524

                                                                         
Query: 411   tttgagaacaaaattgaatcaagtggttctacttttgctttcactaggtatcaacgactt 470
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10525 tttgagaacaaaattgaatcaagtggttctacttttgctttcactaggtatcaacgactt 10584

                                                                         
Query: 471   acttcactttccaatgttggacaaaccaaaaactatccagctaagcgaagccctcgaaaa 530
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10585 acttcactttccaatgttggacaaaccaaaaactatccagctaagcgaagccctcgaaaa 10644

                                                                         
Query: 531   tttgtatgccattggcgctctcaatagcagaggtgcaatcacaaaagtaggacaagttat 590
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10645 tttgtatgccattggcgctctcaatagcagaggtgcaatcacaaaagtaggacaagttat 10704

                                                                         
Query: 591   gtgtgatttcccatgtgatcctgaatatgccaaggtaatattttctagcgtgtttgaaga 650
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 10705 gtgtgatttcccatgtgatcctgaatatgccaaggtaatatattctagcgtgtttgaaga 10764

                                                                         
Query: 651   aagctgtaattggtgttctacctgaaattgttaccgattgtctctatgcttcaagagagc 710
             ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 10765 aagctgtaa-tggtgttctacctgaaattgtta-cgattgtctctatgcttcaagagagc 10822

                                                                     
Query: 711   aactctttatttgtaccggggactcaatttgggaagaaaagacanaactttttggg 766
             |||||| |||||||||| ||||||||| || ||||||||||||| |||||||||||
Sbjct: 10823 aactctatatttgtacc-gggactcaa-ttcggaagaaaagacaaaactttttggg 10876


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7413
Number of Sequences: 1807
Number of extensions: 7413
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)