BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH04RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1699 1320 0.0
>3x_Contig1699
Length = 18038
Score = 1320 bits (666), Expect = 0.0
Identities = 741/757 (97%), Gaps = 8/757 (1%)
Strand = Plus / Plus
Query: 49 acgttttggaaaacaaagacattgtactagaagcacctttcacagaagttatacaaccac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4632 acgttttggaaaacaaagacattgtactagaagcacctttcacagaagttatacaaccac 4691
Query: 109 aaaagaccgaagaagaacttagaatccaagctgaaaaaagaagggagactggtaagaggt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4692 aaaagaccgaagaagaacttagaatccaagctgaaaaaagaagggagactggtaagaggt 4751
Query: 169 tacaagaacaagccaaacaaagaaggttagaaaaacttcgtcaaaaagaggaagagtatg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4752 tacaagaacaagccaaacaaagaaggttagaaaaacttcgtcaaaaagaggaagagtatg 4811
Query: 229 agtattatgttaatatcagagaagaattgcgcgaccaaccgaagagacaaattttaataa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4812 agtattatgttaatatcagagaagaattgcgcgaccaaccgaagagacaaattttaataa 4871
Query: 289 ctctacagaacgcaggatttgacgatgaacaagactttatcaactacatctcaaaccttg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4872 ctctacagaacgcaggatttgacgatgaacaagactttatcaactacatctcaaaccttg 4931
Query: 349 aaaaggttttgaaaagaggccgtatattagacgtggaagacgacgatcaagaagaatctc 408
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4932 aaaaggttttgaaaagaggccgtatatcagacgtggaagacgacgatcaagaagaatctc 4991
Query: 409 aggagtccaaatttgatttagtggatgtcccagatgaagagctaaacgatgaacaaaaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4992 aggagtccaaatttgatttagtggatgtcccagatgaagagctaaacgatgaacaaaaaa 5051
Query: 469 aggagaaacgtaagcaaaggctattaaaggctaacattgaagcaagattaaaggcaaaag 528
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5052 aggagaaacgtaagccaaggctattaacggctaacattgaagcaagattaaaggcaaaag 5111
Query: 529 aggaaaaagcacaattgcaaaaggcattggaagaagcgaagaaaaaggatgaagattggc 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5112 aggaaaaagcacaattgcaaaaggcattggaagaagcgaagaaaaaggatgacgattggc 5171
Query: 589 ggaaacaagatttgaaagggtggacaagggac-aaaagattcaaactcgcgaaattgatc 647
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5172 ggaaacaagatttgacagggtggacaagggacaaaaagattcaaactcgcgaaattgatc 5231
Query: 648 aaaagtagaaaggacaagttgaagttgaaggaggaaatgaaggaccgttaatcac-aagc 706
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 5232 aacagtagaaaggacaagttgaagttgaaggaggaaatgaaggaccgtaaatcacaaagc 5291
Query: 707 tactcaaagaagaatgaagaatcttgcatcttttggcagaggacagtgtttgttcccggg 766
|||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct: 5292 tactcaaagaagaatgaagaatcttgcatc-tttggcagaggacagtg-ttggtcccgg- 5348
Query: 767 ttaaaagatctagacaggcccactatagtataacgat 803
||||||||||||||||| ||||||||| ||||||||
Sbjct: 5349 -taaaagatctagacagg-ccactatag-ataacgat 5382
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8578
Number of Sequences: 1807
Number of extensions: 8578
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)