BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZH05FM1.SCF screened BAC_end (972 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1511 1108 0.0 >3x_Contig1511 Length = 8569 Score = 1108 bits (559), Expect = 0.0 Identities = 617/631 (97%), Gaps = 4/631 (0%) Strand = Plus / Minus Query: 87 tcctgtgtttcaggcaaacatagaaccacagaaaccgcagagagtggatttaggcccacg 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6288 tcctgtgtttcaggcaaacatagaaccacagaaaccgcagagagtggatttaggcccacg 6229 Query: 147 atgcagtctatagggagtctgtcctaatcccaaattcaaagatcttagatccgttatttg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6228 atgcagtctatagggagtctgtcctaatcccaaattcaaagatcttagatccgttatttg 6169 Query: 207 tattggatcgccattccccttacataagtttccttccagtaatgcatggaaatgtctgga 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6168 tattggatcgccattccccttacataagtttccttccagtaatgcatggaaatgtctgga 6109 Query: 267 gtaccaagacgctagacgtgtccgtgtccgtgtccgtgtccggttcaaagaaaaagtgtt 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6108 gtaccaagacgctagacgtgtccgtgtccgtgtccgtgtccggttcaaagaaaaagtgtt 6049 Query: 327 tcatggcaaatatgaaagaaaagattcacagccaagacaccaaaagacaacaccatgttt 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6048 tcatggcaaatatgaaagaaaagattcacagccaagacaccaaaagacaacaccatgttt 5989 Query: 387 cataccttgttagccatgtatggtacgatatgggaagacctatgttagttgaaagcaggt 446 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 5988 cataccttgttagccatgtatggtacgatatgggaagacctatgttagtagaaagcaggt 5929 Query: 447 accgtcaatcaacctgcttaacccataatcgtcatcctctaccagagatgcaaataaaaa 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 5928 accgtcaatcaacctgcttaacccataatcgtcatcctctaccagagatgcaaaaaaaaa 5869 Query: 507 aatctactgcctgagggaatacactcacggggatggctgacacgtaggtaccgagttgct 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5868 aatctactgcctgagggaatacactcacggggatggctgacacgtaggtaccgagttgct 5809 Query: 567 accagtttcatcaagacagcacagattctgataggagagggatcttcagtgatatgaaat 626 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 5808 accagttacatcaagacagcacagattcggataggagaggatacttcagtgatatgaaat 5749 Query: 627 taggtaaacaaatttaaataaacaaaattaaaattaaaagtgtgcaccgcatgaatagtt 686 ||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| Sbjct: 5748 aaggtaaacaaattaaaataaacaaaattaaaa-taaaagtgtgcaccgcatg-atagtc 5691 Query: 687 taataaggaaaccctgtgtggctacaaattg 717 ||||||||||| ||||||| ||||||||||| Sbjct: 5690 taataaggaaa-cctgtgt-gctacaaattg 5662 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7522 Number of Sequences: 1807 Number of extensions: 7522 Number of successful extensions: 69 Number of sequences better than 1.0e-20: 1 length of query: 972 length of database: 10,358,551 effective HSP length: 16 effective length of query: 956 effective length of database: 10,329,639 effective search space: 9875134884 effective search space used: 9875134884 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)