BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH07FM1.SCF screened BAC_end
(1107 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1623 549 e-156
>3x_Contig1623
Length = 14379
Score = 549 bits (277), Expect = e-156
Identities = 328/339 (96%), Gaps = 7/339 (2%)
Strand = Plus / Minus
Query: 89 aacagccgcaccatacttttgtagttttgtaatcaatccatcaccctgttttacgagaag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9520 aacagccgcaccatacttttgtagttttgtaatcaatccatcaccctgttttacgagaag 9461
Query: 149 ttggtattgagcgttcttgttatctggccgatttgtctctactataccgttgacacggtc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9460 ttggtattgagcgttcttgttatctggccgatttgtctctactataccgttgacacggtc 9401
Query: 209 gatgacacagtttttttgtttcgttggtatgaatttgcttagatctttgtctaagaaatc 268
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9400 gatgacacagttgagttgtttcgttggtatgaatttgcttagatctttgtctaagaaatc 9341
Query: 269 ttcagagacgccgaatgcaccagccatcgattttatcgagagcgtcttgtaagattccaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9340 ttcagagacgccgaatgcaccagccatcgattttatcgagagcgtcttgtaagattccaa 9281
Query: 329 tagttgagcgtaaaccattcttctcatttcccttacaaaataatctggcgtgtttggttc 388
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 9280 tagttgagcgtaaaccattcttctcatttcccttacaaaataatc-ggcgtg-ttggttc 9223
Query: 389 aaaatatttttggagggcaattagcacttttgtcgtagg 427
|| || |||||||||||| |||||| |||||||||||
Sbjct: 9222 aa---atatttggagggcaa-tagcac-tttgtcgtagg 9189
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9244
Number of Sequences: 1807
Number of extensions: 9244
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 1107
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1091
effective length of database: 10,329,639
effective search space: 11269636149
effective search space used: 11269636149
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)