BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH07RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1271 0.0
>3x_Contig1637
Length = 14855
Score = 1271 bits (641), Expect = 0.0
Identities = 691/701 (98%), Gaps = 5/701 (0%)
Strand = Plus / Minus
Query: 47 cgatctcatcctgat-aatatttggaacgttactgttgtgtaaagttcttgtagcaaaat 105
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2877 cgatctcatcctgatcaatatttggaacgttactgttgtgtaaagttcttgtagcaaaat 2818
Query: 106 caatcaaggattcgctatcgacacgctttggaccaaatgggaacttaataaaactaccac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2817 caatcaaggattcgctatcgacacgctttggaccaaatgggaacttaataaaactaccac 2758
Query: 166 tcttgcggttaggtaagatcaatgcaaattccggggctctttctaacctatattttctct 225
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 2757 tcttgcggttaggtaagatcaatgcaaattccggggctctttctaacctagagtttctct 2698
Query: 226 tctgagtcaaagtatcgaaggacaactccctacaaatggcttcattctttgaagaatctg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2697 tctgagtcaaagtatcgaaggacaactccctacaaatggcttcattctttgaagaatctg 2638
Query: 286 tcggattcacacagttgaaatgtaccgtattgattcctatcgagtcagccttgttactta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2637 tcggattcacacagttgaaatgtaccgtattgattcctatcgagtcagccttgttactta 2578
Query: 346 ccaacttccaaatccgttgaaaaagcgaacagtcttcacagtttttgaactgataagaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2577 ccaacttccaaatccgttgaaaaagcgaacagtcttcacagtttttgaactgataagaag 2518
Query: 406 attcgatatcttcaaaatcagaggttggccaaaatgagacaaagtatggttcagtttgag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2517 attcgatatcttcaaaatcagaggttggccaaaatgagacaaagtatggttcagtttgag 2458
Query: 466 gttctgataaaatcttcaagagctcaccatcattcaacagtttactcttgctcgatagtt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2457 gttctgataaaatcttcaagagctcaccatcattcaacagtttactcttgctcgatagtt 2398
Query: 526 tagtgatatccagattgtctgcatccagagcttcctttcttgcaaaatttagcaaagttg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 tagtgatatccagattgtctgcatccagagcttcctttcttgcaaaatttagcaaagttg 2338
Query: 586 tttcagtccgttccaaacctctggaaaatgccttgat-aagccttctggt-catataatc 643
|||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct: 2337 tttcagtccgttccaaacctctgggaaatgccttgataaagccttctggtccatataatc 2278
Query: 644 tgatggtagggtatgaattaataccctctttcatacataagtctcctgactcgatacaat 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 tgatggtagggtatgaattaataccctctttcatacataagtctcctgactcgatacaat 2218
Query: 704 ccacttgatggtagaaatattgttgaactgcaaggattcat 744
||||||||||| ||| ||| |||||| ||||||||||||||
Sbjct: 2217 ccacttgatgg-agagata-tgttgagctgcaaggattcat 2179
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6893
Number of Sequences: 1807
Number of extensions: 6893
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)