BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC5ZH08FM1.SCF screened BAC_end
         (1120 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1500                                                         377   e-104

>3x_Contig1500 
          Length = 9720

 Score =  377 bits (190), Expect = e-104
 Identities = 202/206 (98%)
 Strand = Plus / Plus

                                                                        
Query: 85   tacctcgatatcgattataaatcatgggctggaattcgtcaacttgcgtttgaagtgatc 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9515 tacctcgatatcgattataaatcatgggctggaattcgtcaacttgcgtttgaagtgatc 9574

                                                                        
Query: 145  tctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcct 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9575 tctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcct 9634

                                                                        
Query: 205  agagtttactggtttttgcacaagcctcatcacaaatggttggttaccactccatatgcg 264
            ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9635 agagtttacagggctttgcacaagcctcatcacaaatggttggttaccactccatatgcg 9694

                                      
Query: 265  tcgcatgcgttccacccattggacgg 290
            |||||||||||||||||| |||||||
Sbjct: 9695 tcgcatgcgttccacccagtggacgg 9720


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6517
Number of Sequences: 1807
Number of extensions: 6517
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1120
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1104
effective length of database: 10,329,639
effective search space: 11403921456
effective search space used: 11403921456
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)