BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC5ZH08FM1.SCF screened BAC_end (1120 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1500 377 e-104 >3x_Contig1500 Length = 9720 Score = 377 bits (190), Expect = e-104 Identities = 202/206 (98%) Strand = Plus / Plus Query: 85 tacctcgatatcgattataaatcatgggctggaattcgtcaacttgcgtttgaagtgatc 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9515 tacctcgatatcgattataaatcatgggctggaattcgtcaacttgcgtttgaagtgatc 9574 Query: 145 tctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcct 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9575 tctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcct 9634 Query: 205 agagtttactggtttttgcacaagcctcatcacaaatggttggttaccactccatatgcg 264 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9635 agagtttacagggctttgcacaagcctcatcacaaatggttggttaccactccatatgcg 9694 Query: 265 tcgcatgcgttccacccattggacgg 290 |||||||||||||||||| ||||||| Sbjct: 9695 tcgcatgcgttccacccagtggacgg 9720 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6517 Number of Sequences: 1807 Number of extensions: 6517 Number of successful extensions: 38 Number of sequences better than 1.0e-20: 1 length of query: 1120 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1104 effective length of database: 10,329,639 effective search space: 11403921456 effective search space used: 11403921456 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)