BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH08RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1239 0.0
>3x_Contig1640
Length = 15521
Score = 1239 bits (625), Expect = 0.0
Identities = 672/684 (98%), Gaps = 4/684 (0%)
Strand = Plus / Plus
Query: 48 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 atgatggataaggatattagagaagctatgcagaaattcaaatcagagatggacaaatct 2085
Query: 108 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2086 ggcataaatttgggtcctgaccaactagggcctttgatgaaagttctaggaatcgaaaag 2145
Query: 168 aagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaatca 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2146 aagtaatattgttcaatgacttcctgcatctcacttcctgattattcactggaagaatca 2205
Query: 228 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2206 tcaggcatgttgataatagactgtctgtttgtatactttatgtcaatagatatctatact 2265
Query: 288 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 atacttttacaacaaatatgtatattttatgaaattatttcattgcaggattgattggct 2325
Query: 348 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 tggggttgtgatatattgaatgtaagtggaaatataccttgcactttggacatgattctt 2385
Query: 408 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2386 agtttaatgaaatatcctttttttatttggccaagtaagataataaatccacctttgtga 2445
Query: 468 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2446 caatatggactgggttcagaccctcagtaatgatagctgctgagttcttttcaaagaaag 2505
Query: 528 agttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 agttcaactcagacaaagttgtattgacatcgaaacgaacaaatatcttcttatgagact 2565
Query: 588 tgtcggcgttatatgaagagatgtcattaaaggtatttaacttacggaaatcaaagaaca 647
||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct: 2566 tgtcggcgttataggaagagatgtcatcaaagttattcaacttacggaaatcaaagaaca 2625
Query: 648 gacttttaatgctagaaacatccttggaagggggataaattccttaattaattgagacaa 707
||||||||||||||||||||||||||||| | |||||| ||| |||| ||||||||||||
Sbjct: 2626 gacttttaatgctagaaacatccttggaa-gtggataatttctttaa-taattgagacaa 2683
Query: 708 agttacccaaacccgcacaacttt 731
||||||| || ||||||||||||
Sbjct: 2684 agttacc--aaaccgcacaacttt 2705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9369
Number of Sequences: 1807
Number of extensions: 9369
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)