BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH11FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1145 1231 0.0
>3x_Contig1145
Length = 5226
Score = 1231 bits (621), Expect = 0.0
Identities = 663/673 (98%), Gaps = 3/673 (0%)
Strand = Plus / Plus
Query: 92 tgtggcaggagaccaggattggagctttattcggccaagtctaggtgtagatctgtccat 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274 tgtggcaggagaccaggattggagctttattcggccaagtctaggtgtagatctgtccat 4333
Query: 152 gtatatagtcaaaactcagtgatttttcaagattgtcaataataaaaggaaaataataac 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4334 gtatatagtcaaaactcagtgatttttcaagattgtcaataataaaaggaaaataataac 4393
Query: 212 aaactgttttcttttacaaagttcaccaaggcaggtacaattcgagctccccaagaaaca 271
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4394 aaactgaaatcttaaacaaagttcaccaaggcaggtacaattcgagctccccaagaaaca 4453
Query: 272 gaccgcactgaatcaggtaataccaatattatatcaaaattaaccaccaaaagcaaagag 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4454 gaccgcactgaatcaggtaataccaatattatatcaaaattaaccaccaaaagcaaagag 4513
Query: 332 gacaaaatggatccatttattcaggttttcaaggacacagaggaacaattgaaccaatta 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4514 gacaaaatggatccatttattcaggttttcaaggacacagaggaacaattgaaccaatta 4573
Query: 392 ttgcagatattagataggaagaagaaagggagatcgaacaccagttcgaaagagatctcg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4574 ttgcagatattagataggaagaagaaagggagatcgaacaccagttcgaaagagatctcg 4633
Query: 452 gaaatcatctctgaggctcaagagactatccaagatctaaatgagagtatagaaatgatg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4634 gaaatcatctctgaggctcaagagactatccaagatctaaatgagagtatagaaatgatg 4693
Query: 512 aaacaggaacaagctattcccgaatacgaaattcagacccgtgagaagtccatggcaaac 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4694 aaacaggaacaagctattcccgaatacgaaattcagacccgtgagaagtccatggcaaac 4753
Query: 572 ctggaatcaaaattgaaacaatgccagtcgttaaatatcgagacaacccgcgacaccgat 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4754 ctggaatcaaaattgaaacaatgccagtcgttaaatatcgagacaacccgcgacaccgat 4813
Query: 632 gcagctacccaatcatcattgctgccgcagcaacaacagcgtggcgattcctttcatttg 691
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4814 gcagctacccaatcatcattgctgccgcagcaacaacagcgtggcgattccttcgatttg 4873
Query: 692 gacattcga-gcaactgcaggcaccgaccaatcagacgcggcaaaccacgacgccgtaca 750
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4874 gaca-tcgaggcaactgcaggcaccgaccaatcagacgcggcaaaccacgacgccgtaca 4932
Query: 751 ggaagcaattact 763
|| ||||||||||
Sbjct: 4933 gg-agcaattact 4944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7112
Number of Sequences: 1807
Number of extensions: 7112
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)