BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC5ZH11RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 1098 0.0
>3x_Contig1716
Length = 19108
Score = 1098 bits (554), Expect = 0.0
Identities = 634/654 (96%), Gaps = 5/654 (0%)
Strand = Plus / Minus
Query: 45 ctttttgttgttaaaatactattcgcgcatgcaatgttgagaaaaaggataaaacaaatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14987 ctttttgttgttaaaatactattcgcgcatgcaatgttgagaaaaaggataaaacaaatt 14928
Query: 105 aaagaaaactcgtagctagtaactgtttgggcttaatctcattactcatttagtataacc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14927 aaagaaaactcgtagctagtaactgtttgggcttaatctcattactcatttagtataacc 14868
Query: 165 acggtctaataagcaaatgctatgaagtatgtctgatggtagcgttatatctctttttta 224
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 14867 acggtctaataagcaaatgctatgaagtatgtctgatggtagcgttatatccgccgttta 14808
Query: 225 aaccgcagaaactttaattttactaacacttataacatcaaaagaacattcttcattaca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14807 aaccgcagaaactttaattttactaacacttataacatcaaaagaacattcttcattaca 14748
Query: 285 ggagatgtgcctgttgggtatcaggtgcccgatttcccatccttatattggcccatgaac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14747 ggagatgtgcctgttgggtatcaggtgcccgatttcccatccttatattggcccatgaac 14688
Query: 345 aatggtaagttcagcgtcgcatatctctactacctccccgatatatggaggtttacgatc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14687 aatggtaagttcagcgtcgcatatctctactacctccccgatatatggaggtttacgatc 14628
Query: 405 ttctggaccatgattctatttgcaatagtatacggaactacaggtgcaatcgcatggact 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14627 ttctggaccatgattctatttgcaatagtatacggaactacaggtgcaatcgcatggact 14568
Query: 465 acacacaagaaaatcttattcggcttttggatgatcccattgtatataatgataggcatg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14567 acacacaagaaaatcttattcggcttttggatgatcccattgtatataatgataggcatg 14508
Query: 525 gcgcaagcgtttgtcttgggaactgtggtgggtatattgatcgcgatc-tatataatgca 583
||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 14507 gcgcaggcgtttgtctcgggaactgtggtgggtatattgatcgcgatcatatataaggca 14448
Query: 584 gggttatttgcaatgtctacatgggattcccttatgctgtgctgggggcccaaattttat 643
|||||||||||||||||||||| |||||||||||||||||||| | || |||||||||||
Sbjct: 14447 gggttatttgcaatgtctacat-ggattcccttatgctgtgct-gtggtccaaattttat 14390
Query: 644 ttaacgggagcacaaattacttcgaagaccaattccgatcatatgaatgatgta 697
|||||| |||||||| |||| |||| || ||| ||||||||||||| |||||||
Sbjct: 14389 ttaacgtgagcacaagttac-tcgatga-caagtccgatcatatgagtgatgta 14338
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8519
Number of Sequences: 1807
Number of extensions: 8519
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)