BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA01FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1393 513 e-145
>3x_Contig1393
Length = 6980
Score = 513 bits (259), Expect = e-145
Identities = 321/342 (93%)
Strand = Plus / Minus
Query: 252 tagcncctaagagaaattctcaaagaccgcaatcaatgatggctcaaagagttaatggtg 311
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6193 tagctcctaagagaaattctcaaagaccgcaatcaatgatggctcaaagagttaatggtg 6134
Query: 312 atagacgttctttcatgcacaataattccggcgttgcttcccctcgcgatgctagaccta 371
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6133 atagacgttctttcatgcagaataattccggtgttgcttcccctcgcgatgctagaccta 6074
Query: 372 gaaccgtcgtacggaagccgcccaacaatgccaaatcgcaacaaaacaacggactttacc 431
||| |||||| |||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct: 6073 gaagtgtcgtagggaagccgtccaacaatgccaaatcgcaacaaaatagtggactttacc 6014
Query: 432 caagggaacctcctcaaaagcgttcaagcttcgaaaagcaaagaccgatgtccaccaacc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6013 caagggaacctcctcaaaagcgttcaagcttcgaaaagcaaagaccgatgtccaccaacc 5954
Query: 492 ttggatttaaaaacttaccgctgacacacgatccgcaactcactgaccagcactaccagc 551
||||||||||||||||| || ||| | | ||||||||||||||||||||| || | ||||
Sbjct: 5953 ttggatttaaaaacttatcgttgagagaggatccgcaactcactgaccagtacgagcagc 5894
Query: 552 ctcaacccccactccacccacatccacaacaaagacaatcta 593
||||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 5893 ctcaagccccattccaaccacatccacaacaaagacaatcta 5852
Score = 101 bits (51), Expect = 3e-21
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 130 aacaacaaaggaaaacaccaggnaaaacgcgcaactcccccacgaaagcccgagagaaac 189
|||||||||||||||||| ||| ||| |||||||| | |||||||| |||||||||
Sbjct: 6315 aacaacaaaggaaaacactaggttaaatgcgcaactttctcacgaaagtttgagagaaac 6256
Query: 190 cgccatttttcaacaagcacaaaatcaataccgaagacagcaacagcaaa 239
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6255 cgccagcaaacaacaagcacaaaatcaataccgaagacagcaacagcaaa 6206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,747
Number of Sequences: 1807
Number of extensions: 11747
Number of successful extensions: 174
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)