BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA01RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1656 1370 0.0
>3x_Contig1656
Length = 14482
Score = 1370 bits (691), Expect = 0.0
Identities = 727/735 (98%), Gaps = 3/735 (0%)
Strand = Plus / Minus
Query: 80 aagcttttaagaaatcgcctgcagcagattgaattgaagaatcgtgttcaattgataaat 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2233 aagcttttaagaaatcgcctgcagcagattgaattgaagaatcgtgttcaattgataaat 2174
Query: 140 aatctaacaatttagatatcaaatgttgtttcttcaataatgcgattattccagttggag 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 aatctaacaatttagatatcaaatgttgtttcttcaataatgcgattattccagttggag 2114
Query: 200 catctggtttatccgtagaaatgactttaagaaggaaatccatcaatggagggttatcga 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 catctggtttatccgtagaaatgactttaagaaggaaatccatcaatggagggttatcga 2054
Query: 260 tgtgtgcaataaatctatcaactatattctcttgttttaaaatgaagtttatcatgccac 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 tgtgtgcaataaatctatcaactatattctcttgttttaaaatgaagtttatcatgccac 1994
Query: 320 taatgtccatatctaataaacgttcattgattttcatgaaatatgtggatgcaatgattg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 taatgtccatatctaataaacgttcattgattttcatgaaatatgtggatgcaatgattg 1934
Query: 380 aaagtggagcagggtgttccaaagtggaccataacttgactagaaggtcttcgttatcca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1933 aaagtggagcagggtgttccaaagtggaccataacttgactagaaggtcttcgttatcca 1874
Query: 440 tgaatgcagaggaaatggtccacacatccgcagagagaatctctgcagcgatcctggctc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 tgaatgcagaggaaatggtccacacatccgcagagagaatctctgcagcgatcctggctc 1814
Query: 500 ttcttgactctacctgttcttcactttctggtggtagagtgatactcgtttcagctgaag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 ttcttgactctacctgttcttcactttctggtggtagagtgatactcgtttcagctgaag 1754
Query: 560 actcagatgcattatctggaacgacgtccagtgtattttggtattgtgattgagtattat 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 actcagatgcattatctggaacgacgtccagtgtattttggtattgtgattgagtattat 1694
Query: 620 tttcatcttctgaattctctaagtcatcccctgaatccgcttctgcctctggagaacctt 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 tttcatcttctgaattctctaagtcatcccctgaatccgcttctgcctctggagaacctt 1634
Query: 680 gtttaccctgatcttcctctgcatcgttatcggatgaatccgacccattttccccttttt 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1633 gtttaccctgatcttcctctgcatcgttatcggatgaatccgacccattttcccc-ttct 1575
Query: 740 tgttgttcctcatcgaccatgctatcgtcagctggatttaataactgttcgttgggtcac 799
||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||
Sbjct: 1574 tgttgttcctcatcgaccatgctatcgtcagctggttctaatacgtgttcgtt-ggtcac 1516
Query: 800 ataattcaaccaacc 814
|||| ||||||||||
Sbjct: 1515 ataa-tcaaccaacc 1502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7325
Number of Sequences: 1807
Number of extensions: 7325
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)