BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZA02FM1.SCF screened BAC_end
         (892 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig548                                                         1059   0.0  

>3x_Contig548 
          Length = 2225

 Score = 1059 bits (534), Expect = 0.0
 Identities = 546/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 227 aaacgtgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgac 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaacgtgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgac 445

                                                                       
Query: 287 tatgctccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatct 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatgctccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatct 505

                                                                       
Query: 347 gccgatggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggt 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gccgatggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggt 565

                                                                       
Query: 407 tgggccaagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttatt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgggccaagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttatt 625

                                                                       
Query: 467 gccgttgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattct 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gccgttgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattct 685

                                                                       
Query: 527 accgaaatgttgattcaagaagccggccaagtttggtatccaaattccgcgttcaagaca 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 accgaaatgttgattcaagaagccggccaagtttggtatccaaattccgcgttcaagaca 745

                                                                       
Query: 587 gcccaggctatcaatgactttaatcatggtgaacaattgccattaatgatcctagccaac 646
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gcccaggctatcaatgacttcaatcatggtgaacaattgccattaatgatcctagccaac 805

                                                                       
Query: 647 tggagaggtttctctggtggacaacgtgatatgtacaacgaagttttgaagtatggttct 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggagaggtttctctggtggacaacgtgatatgtacaacgaagttttgaagtatggttct 865

                                                                       
Query: 707 tttatcgttgatgcattggttgattacaaacagcctataattacatacattcctccaact 766
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ttcatcgttgatgcattggttgattacaaacagcctataattacatacattcctccaact 925

                     
Query: 767 gtggaactaa 776
           |  |||||||
Sbjct: 926 ggtgaactaa 935


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6067
Number of Sequences: 1807
Number of extensions: 6067
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)