BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA02RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1499 1330 0.0
>3x_Contig1499
Length = 7822
Score = 1330 bits (671), Expect = 0.0
Identities = 673/674 (99%)
Strand = Plus / Minus
Query: 47 tgtacaagaagtacgaggataaagggttcattgtgttgggtttcccatgtaaccagtttg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgtacaagaagtacgaggataaagggttcattgtgttgggtttcccatgtaaccagtttg 615
Query: 107 gacatcaagagccaggtactgatgaagagatttctcagttctgtcaactaaactacggtg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gacatcaagagccaggtactgatgaagagatttctcagttctgtcaactaaactacggtg 555
Query: 167 tttctttcccaatcttgaagaaggttgatgtgaacggttctgaagctgacccagtctacg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttctttcccaatcttgaagaaggttgatgtgaacggttctgaagctgacccagtctacg 495
Query: 227 acttcttgaagaacgaaaaatccggattgttgggtttcaagggtatcaaatggaactttg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acttcttgaagaacgaaaaatccggattgttgggtttcaagggtatcaaatggaactttg 435
Query: 287 aaaaattccttgttgacaagaagggtaccgttgttgaaaggtacagttctttgactaagc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaaaattccttgttgacaagaagggtaccgttgttgaaaggtacagttctttgactaagc 375
Query: 347 catcttcgttagaagaacctattgaaaaattgttgaatgaataaatttgattaaaacaca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catcttcgttagaagaacctattgaaaaattgttgaatgaataaatttgattaaaacaca 315
Query: 407 gactccactctaccattcttgctctatttataaaatgtattgcactatcctcttccggaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gactccactctaccattcttgctctatttataaaatgtattgcactatcctcttccggaa 255
Query: 467 gttgttaaaatcttttcattgaactgttggattctattctatatctaattaatttactgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gttgttaaaatcttttcattgaactgttggattctattctatatctaattaatttactgt 195
Query: 527 gttcaaagtaaatataaccaactgataataataataactatgataataaaataatgataa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gttcaaagtaaatataaccaactgataataataataactatgataataaaataatgataa 135
Query: 587 taataataataagagtgataaaatgaatcaaaaattgcataaaaactaaggaactgtttt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 taataataataagagtgataaaatgaatcaaaaattgcataaaaactaaggaactgtttt 75
Query: 647 cgttntcaacaaattttatattatttcagtattatacaatggattctctctattcagaag 706
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 cgttttcaacaaattttatattatttcagtattatacaatggattctctctattcagaag 15
Query: 707 ggtttatgatattt 720
||||||||||||||
Sbjct: 14 ggtttatgatattt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,129
Number of Sequences: 1807
Number of extensions: 10129
Number of successful extensions: 315
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)