BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZA03FM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1588                                                        1033   0.0  

>3x_Contig1588 
          Length = 14692

 Score = 1033 bits (521), Expect = 0.0
 Identities = 547/556 (98%)
 Strand = Plus / Minus

                                                                        
Query: 87   tggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatcagttt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5726 tggcagattccaaatcctctggaacaaaccaatctctttcgtgaatcgacggatcagttt 5667

                                                                        
Query: 147  ccggtgtacgcacatccttgttttcttgaacgttgatacaaactttctcaccacgtctag 206
            ||||||||||||||||||||| | |  |||||||||||||||||||||||||||||||||
Sbjct: 5666 ccggtgtacgcacatccttgtatacaggaacgttgatacaaactttctcaccacgtctag 5607

                                                                        
Query: 207  tcctaatattggctgncatcgtggggaacctatcttgcctattgataatctcatcgggta 266
            ||||||||||||||| || ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 5606 tcctaatattggctgtcaacgtggggaacctagcgtgcctattgataatctcatcgggta 5547

                                                                        
Query: 267  aaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgtaaaat 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5546 aaaacagcgacctactagccgaatttttatgatcccatgggttcttcaaattcgtaaaat 5487

                                                                        
Query: 327  tgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacgtcgt 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5486 tgtcacgacccatgcgtgggaaaacagccaacgacaacggagtcaccaagttcacgtcgt 5427

                                                                        
Query: 387  taaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctcaacct 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5426 taaatttcttcaatttctgttctgccacggccctgcgcatctgcatgttcctctcaacct 5367

                                                                        
Query: 447  ctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccgaccgt 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5366 ctgcaccctcgaagtccttatatggcttcgcaggtgtcgcctccaacataaaccgaccgt 5307

                                                                        
Query: 507  actcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattcaact 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5306 actcgggatggaaatgaacgttcaactcgtcacactcggcctggtattccgtattcaact 5247

                                                                        
Query: 567  gaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcgaact 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5246 gaaccaaaacctcatcatgtttcacactaagaacaacgttctcattagcctcatcgaact 5187

                            
Query: 627  cacaaataatatactc 642
            ||||||| ||||||||
Sbjct: 5186 cacaaatcatatactc 5171


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7200
Number of Sequences: 1807
Number of extensions: 7200
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)