BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA03RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1376 0.0
>3x_Contig1794
Length = 36744
Score = 1376 bits (694), Expect = 0.0
Identities = 746/757 (98%), Gaps = 5/757 (0%)
Strand = Plus / Plus
Query: 40 gcttcgccatttttgtagctctttcctcttcttcaaagatctccatttcgttagcttcca 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29676 gcttcgccatttttgtagctctttcctcttcttcaaagatctccatttcgttagcttcca 29735
Query: 100 tatcgtcgtcatcatctgaatcaaagtatttccttttactacctttgttgaagatagacc 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29736 tatcgtcgtcatcatctgaatcaaagtatttccttttactacctttgttgaagatagacc 29795
Query: 160 aaatttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctaaatcat 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29796 aaatttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctaaatcat 29855
Query: 220 catcttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29856 catcttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgt 29915
Query: 280 gtcttgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29916 gtcttgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttg 29975
Query: 340 gttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29976 gttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtt 30035
Query: 400 tagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagtttcttcggga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30036 tagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagtttcttcggga 30095
Query: 460 gcggcttcttgtcttcctttggtccttccctagacttctgctctgctcgcttcattaatt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30096 gcggcttcttgtcttcctttggtccttccctagacttctgctctgctcgcttcattaatt 30155
Query: 520 catcaaacgatagtttcttgattggctcccttttcggtaccacgacaggatactttccgc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30156 catcaaacgatagtttcttgattggctcccttttcggtaccacgacaggatactttccgc 30215
Query: 580 ttgtggtattgacaccaggttttttcttataaattggagcctcatccttcggcgatgacg 639
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 30216 ttgtggtattgacaccaggttttttcttataaattggagcctcat-cttcggcgatgacg 30274
Query: 640 ctntatgcctggccttagcagccagtttagtcgatgtggatgatataccttgctt-aacc 698
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 30275 ctttatgcctggccttagcagcaggtttagtcgatgtggatgatataccttgcttcaacc 30334
Query: 699 tacgcgctttctttaatctttgaatagccgggtcaacttcaccaacgtaatccctgggga 758
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct: 30335 tacgcgcttcctttaatctttgaatagccgggtcaacttcacgaacgtaat-ccttggga 30393
Query: 759 agtagttttttcttcagattggaagagatttagcttt 795
||||| |||||||||||||| ||||||||||||||||
Sbjct: 30394 agtag-tttttcttcagatt-gaagagatttagcttt 30428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8026
Number of Sequences: 1807
Number of extensions: 8026
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)