BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA04FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1603 1005 0.0
>3x_Contig1603
Length = 12146
Score = 1005 bits (507), Expect = 0.0
Identities = 568/583 (97%), Gaps = 4/583 (0%)
Strand = Plus / Plus
Query: 88 cattggtagaaaatatgagttcttgacaatttatcccagtgtttttctgcaaatacatag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9491 cattggtagaaaatatgagttcttgacaatttatcccagtgtttttctgcaaatacatag 9550
Query: 148 tcaagatgctcgatccgctcttggaacttgaacatttcaaaatgaactggtagtaatttg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9551 tcaagatgctcgatccgctcttggaacttgaacatttcaaaatgaactggtagtaatttg 9610
Query: 208 gaaaccgcctgttgtttattgcctccaacgagctagaaggataaaacattcgcccatacg 267
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9611 gaaaccgcctgatgtacattgcctccaacgagctagaaggataaaacattcgcccatacg 9670
Query: 268 ctaaagaaatcggtaattccggcactttcggtacttctaacttggaattatttttataat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9671 ctaaagaaatcggtaattccggcactttcggtacttctaacttggaattatttttataat 9730
Query: 328 gatggtagtagggctcaatgtaccggaaactttgagtcatttgctgcaaatgcactgatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9731 gatggtagtagggctcaatgtaccggaaactttgagtcatttgctgcaaatgcactgatg 9790
Query: 388 aagatccctcgataaactgatctaagttctcacaattggtgtataaatatgttaaagagc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9791 aagatccctcgataaactgatctaagttctcacaattggtgtataaatatgttaaagagc 9850
Query: 448 cattgattgtcttattgttagttagctctaacgtattgtaagaataaggtgtggccctgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9851 cattgattgtcttattgttagttagctctaacgtattgtaagaataaggtgtggccctgt 9910
Query: 508 tacttacttgaacccttcaaggcagtcggaatgtcaaactgtagaatattccgacttgtt 567
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9911 tacttacttgaa-ccttcaaggcagtcggaatgtcaaactgtagaatattccgactagtt 9969
Query: 568 cctactatgttctcataactggtattttttatttcatgacgtgcatttctttaaactgcc 627
||||||||||||||||||||| || | |||||| ||||||||||| ||||| ||||||||
Sbjct: 9970 cctactatgttctcataactgtta-tctttattccatgacgtgca-ttcttcaaactgcc 10027
Query: 628 gtagcacattattcatattttccaacatatatcttaccgaact 670
||||||||| || ||||| |||||||||||||| |||||||||
Sbjct: 10028 gtagcacataatccatatattccaacatatatc-taccgaact 10069
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8112
Number of Sequences: 1807
Number of extensions: 8112
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)