BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA05FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1570 1201 0.0
>3x_Contig1570
Length = 12233
Score = 1201 bits (606), Expect = 0.0
Identities = 691/710 (97%), Gaps = 7/710 (0%)
Strand = Plus / Minus
Query: 91 cttcatcgccttcttcctcttcctcttcttcttcttcttcaccctcatcttcttcgtcta 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4486 cttcatcgccttcttcctcttcctcttcttcttcttcttcaccctcatcttcttcgtcta 4427
Query: 151 tgttcaagaactccaacttttcattgatccgggataaagatggactctcgttgtattcgc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4426 tgttcaagaactccaacttttcattgatccgggataaagatggactctcgttgtattcgc 4367
Query: 211 tatcgtcattctt-tcttgatcctggtcagactgctgctgttgcttcttccttaaatatg 269
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4366 tatcgtcatcctgatcttgatcctggtcagactgctgctgttgcttcttccttaaatatg 4307
Query: 270 aatccttaagcacgctagctggtgtgttatgaggcgttggtgcattatcgatcttactcg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4306 aatccttaagcacgctagctggtgtgttatgaggcgttggtgcattatcgatcttactcg 4247
Query: 330 acctcgatgtcttgatagggttggacatttttatgatgtgatccttactattttgccaaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4246 acctcgatgtcttgatagggttggacatttttatgatgtgatccttactattttgccaaa 4187
Query: 390 tacactcaaatgtatacagctaatgtagttcaaatatcctgctgcaacactccaagtatc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4186 tacactcaaatgtatacagctaatgtagttcaaatatcctgctgcaacactccaagtatc 4127
Query: 450 acaaatagcccactacctctacgatcagatgttccaagctgttacgtttcctactgaaag 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4126 acaaatagcccactacctctacgatcagatgttccaagctgttacgtttcctactgaaag 4067
Query: 510 aaaattttctggctaaaaaatgctcttcttatatattccttacatattaaaatagatcac 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4066 aaaattttctggctaaaaaatgctcttcttatatattccttacatattaaaatagatcac 4007
Query: 570 ggaagcatgcaaatactgcaaccgtatgccaattcaaa-gactaaatcgtaccaattcct 628
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4006 ggaagcatgcaaatactgcaaccgtatgccaattcaaaggactaaatcgtaccaattcct 3947
Query: 629 ggtaaaaaaactcggaataaagcactcctgatatcaacggtacattatataattgaatct 688
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3946 ggtaaaaaaactcggaataaagcactcctgatatcaacggtacattatataa-tgaatct 3888
Query: 689 tgagctggaaaatactcttgaataattctgatcccctttttttttctctcaaaagtcgct 748
||||||| |||||||||| | |||| ||||||||| | || |||||||||| |||||||
Sbjct: 3887 tgagctgtaaaatactctgaagtaatcctgatcccc-tcttctttctctcaatagtcgct 3829
Query: 749 ttttttgggatatcagaaatttcagtttttattaagaatgcaataaaatt 798
|| ||| ||||||||| |||||||| |||||| |||||||||||||||||
Sbjct: 3828 ttcttt-ggatatcag-aatttcag-ttttataaagaatgcaataaaatt 3782
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,118
Number of Sequences: 1807
Number of extensions: 11118
Number of successful extensions: 536
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)