BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZA05RM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1335                                                        1326   0.0  

>3x_Contig1335 
          Length = 8696

 Score = 1326 bits (669), Expect = 0.0
 Identities = 739/753 (98%), Gaps = 7/753 (0%)
 Strand = Plus / Minus

                                                                        
Query: 53   attaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatccta 112
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5992 attaatcagattttctcacttaaaacactaagatactatgtcaattcctagtaaatccta 5933

                                                                        
Query: 113  ctaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgcttc 172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5932 ctaatttgcttctgaactttattgatctcgcgtaaacacttacctgaggacatatgcttc 5873

                                                                        
Query: 173  gatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgattttttt 232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5872 gatcattagacagatctctttgtattctgtacttttccaaggtttcgacacgattttttt 5813

                                                                        
Query: 233  cgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggatagaa 292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5812 cgattctaaatagagaatttccgaaaacggtagataaacgtgactatcatgtggatagaa 5753

                                                                        
Query: 293  atggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatatacctagaa 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5752 atggggaaggtgacaacacttggattcgggattcggtgaggaaccacaatatacctagaa 5693

                                                                        
Query: 353  aagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatacatt 412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5692 aagtatcctagattcattgaacaacaggtagttcttaatgattaaattacggtatacatt 5633

                                                                        
Query: 413  ttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactacttag 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5632 ttccaatgttcacgtgactcaaaactgtcatgtgaccgacacaaagaatacactacttag 5573

                                                                        
Query: 473  atttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatagaaatgcaa 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5572 atttcccaattaggagaaacgtaaacattgaaatagtgatataaagtcatagaaatgcaa 5513

                                                                        
Query: 533  tgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaactgctatt 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5512 tgctacatgtgtagaaaccacattacagtgttcatcacgacaacctataaaactgctatt 5453

                                                                        
Query: 593  caggagccaggtactaaataagatcaaacagatacaagccctagttcaaagtagctcaaa 652
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5452 caggagccaggtactaaataagatcaaacagatacaag-cctagttcaaagtagctcaaa 5394

                                                                        
Query: 653  gaataatgactggcgggcaatttcaaccattacattcag-aacaggattctcaaactgcg 711
            |||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 5393 gaataatgactgccggccaatttcaaccattaca-tcagaaacaggattctcaaactgcg 5335

                                                                        
Query: 712  agtacaagtttgcacaatgcccatgttttaagaaccatcaccccaccagctttcagaaat 771
            ||||||||||||||||| | |||||||| |  |||||||||| |||||||||||||||||
Sbjct: 5334 agtacaagtttgcacaa-ggccatgtttaagaaaccatcaccacaccagctttcagaaat 5276

                                             
Query: 772  gaagaaacaagttttgcttcttcctaccgatga 804
            |||| |||||| |||||||| ||||||||||||
Sbjct: 5275 gaag-aacaag-tttgcttc-tcctaccgatga 5246


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6546
Number of Sequences: 1807
Number of extensions: 6546
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)