BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZA06FM1.SCF screened BAC_end
         (943 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1766                                                        1096   0.0  

>3x_Contig1766 
          Length = 23951

 Score = 1096 bits (553), Expect = 0.0
 Identities = 660/685 (96%), Gaps = 8/685 (1%)
 Strand = Plus / Plus

                                                                         
Query: 93    aggctataacaacacttgttctaaataagatcaaaccataacatcaacaaggctttaatt 152
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12444 aggctataacaacacttgttctaaataagatcaaaccataacatcaacaaggctttaatt 12503

                                                                         
Query: 153   tgacgatttcactccttattttgcattcacccagttcagattaagcttcatacaatacac 212
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12504 tgacgatttcactccttattttgcattcacccagttcagattaagcttcatacaatacac 12563

                                                                         
Query: 213   cgtcatgtgatttaattacgttttatcaaagaccttagctcttgcttccgttgtctctgc 272
             ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12564 cgtcatgagattaaattacgttttatcaaagaccttagctcttgcttccgttgtctctgc 12623

                                                                         
Query: 273   tgctgccgttcataaacatcacgctgctgaagaaaaaagagacgttactgtcgtcgtaac 332
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12624 tgctgccgttcataaacatcacgctgctgaagaaaaaagagacgttactgtcgtcgtaac 12683

                                                                         
Query: 333   aaatttcgttgatcaaaatggtcaagtcttggttgacgggcaaacaagtgcgacagatgc 392
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12684 aaatttcgttgatcaaaatggtcaagtcttggttgacgggcaaacaagtgcgacagatgc 12743

                                                                         
Query: 393   cacaacgaccttgcaaccagttactgatattggtggtggaaaaagtgttgaaactacaac 452
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12744 cacaacgaccttgcaaccagttactgatattggtggtggaaaaagtgttgaaactacaac 12803

                                                                         
Query: 453   ggtaacgtcatcatcaggttcatctagttctttatcgggttcctcaacctctttctccgg 512
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 12804 ggtaacgtcatcatcaggttcatctagttctttatcgggttcctcaacctcttcctccgg 12863

                                                                         
Query: 513   tggaaccagttctagttctagttccacttctagcagcagtgacgcttctagttcaagttc 572
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12864 tggaaccagttctagttctagttccacttctagcagcagtgacgcttctagttcaagttc 12923

                                                                         
Query: 573   tggtgaatatggtggtgctttgggtatcacttactctccatacaccagcagtgggttctt 632
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12924 tggtgaatatggtggtgctttgggtatcacttactctccatacaccagcagt-ggttctt 12982

                                                                         
Query: 633   gtaagtctttagacaccataaaatccgacatttagaaatttgt-acaattcaatggtatt 691
             ||||||||| ||||||||| |||||||||||| || ||||||| |||||||| | ||  |
Sbjct: 12983 gtaagtcttcagacaccatcaaatccgacattcag-aatttgtcacaattcagt-gtcat 13040

                                                                         
Query: 692   taaaatttacgacactgacttggacgcgaatggaagcaattttattttcaattacaaagc 751
             || ||| |||||||||||||  |||||| |||||||||||| || | |||||||||||| 
Sbjct: 13041 tagaatctacgacactgactgtgacgcg-atggaagcaattcta-tctcaattacaaag- 13097

                                      
Query: 752   cggccaaaagaacttttgttggtat 776
             ||| ||||||| | |||||||||||
Sbjct: 13098 cggtcaaaagatc-tttgttggtat 13121


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8140
Number of Sequences: 1807
Number of extensions: 8140
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)