BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1356 0.0
>3x_Contig1720
Length = 19870
Score = 1356 bits (684), Expect = 0.0
Identities = 785/807 (97%), Gaps = 9/807 (1%)
Strand = Plus / Minus
Query: 53 agtattctgaattcaataatagatttcagctattcacagaggacggtgtgcaacttagca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11544 agtattctgaattcaataatagatttcagctattcacagaggacggtgtgcaacttagca 11485
Query: 113 gcaagttgctaactaatagcaagcaagttgctgatattttgaatgatgaaggctatggaa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11484 gcaagttgctaactaatagcaagcaagttgctgatattttgaatgatgaaggctatggaa 11425
Query: 173 tcgaggaacacagaatatttggttcatattttgtgatcattttggagctctcatctgagt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11424 tcgaggaacacagaatatttggttcatattttgtgatcattttggagctctcatctgagt 11365
Query: 233 atataagggacgagtcaaaaagtgcgaactcagcaatcattaaatccgaatatggcaata 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11364 atataagggacgagtcaaaaagtgcgaactcagcaatcattaaatccgaatatggcaata 11305
Query: 293 ggaataaaacgccaatcggtagcgtaaaacaatcacaacacattgaattgaatcaaaaga 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11304 ggaataaaacgccaatcggtagcgtaaaacaatcacaacacattgaattgaatcaaaaga 11245
Query: 353 gggcttcaaaaactattgcttcagtcagtgatactgccaagaaaccgttcaaacgaccca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11244 gggcttcaaaaactattgcttcagtcagtgatactgccaagaaaccgttcaaacgaccca 11185
Query: 413 tcatactatcccatagtcaatcgaacctgcaaaatacacatatcaaagcagatcctgatc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11184 tcatactatcccatagtcaatcgaacctgcaaaatacacatatcaaagcagatcctgatc 11125
Query: 473 gtcgtttgacagaggatacaagacttcgtcaagaagcgagtgacaaagcatctgcagaga 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11124 gtcgtttgacagaggatacaagacttcgtcaagaagcgagtgacaaagcatctgcagaga 11065
Query: 533 ggatcactgcgatttctcaagaatgtttcaggagtagtctgaacgtttcccaaacaacgg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11064 ggatcactgcgatttctcaagaatgtttcaggagtagtctgaacgtttcccaaacaacgg 11005
Query: 593 aacttaatgaagtttcagccgcttccttggatccagttgaatatatacgacanacgaaca 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 11004 aacttaatgaagtttcagccgcttccttggatccagttgaatatatacgacaaacgaaca 10945
Query: 653 gtattctaaagacaggaagacttcgacagaaaaactacgtgatttcggaactccccccta 712
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 10944 gtattctaaagacaggaagacttcgacagaaaaactacgtga-ttcggaactcccccata 10886
Query: 713 gtactttaaattccagggactcacggagattgtttacaccataaaagatctatttttgaa 772
|||||||| |||||| |||||||||||||||||| |||| ||| |||||| |||||||
Sbjct: 10885 gtactttagattccatggactcacggagattgttcacacagaaaaggatcta-ttttgaa 10827
Query: 773 ccttaaccagaaccatagcttgtttgaactaaggcttggtaaagggttcaatactaccaa 832
| |||| |||||||||||| ||| ||||||| ||| ||||||| ||||||||||| |||
Sbjct: 10826 cgttaa-cagaaccatagc-tgtatgaactagggc-tggtaaa-tgttcaatacta-caa 10772
Query: 833 agctgacttaaaacgtttatttttgaa 859
||||||| ||||||| |||||||||||
Sbjct: 10771 agctgac-taaaacg-ttatttttgaa 10747
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6778
Number of Sequences: 1807
Number of extensions: 6778
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)