BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZA07FM1.SCF screened BAC_end
         (866 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1423                                                         977   0.0  

>3x_Contig1423 
          Length = 8454

 Score =  977 bits (493), Expect = 0.0
 Identities = 546/557 (98%), Gaps = 5/557 (0%)
 Strand = Plus / Plus

                                                                        
Query: 73   tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 5570

                                                                        
Query: 133  aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 5630

                                                                        
Query: 193  atgttttctctgattcaataatatattgttgacattttaccaattgttcctcttctcttc 252
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 atgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttctcttc 5690

                                                                        
Query: 253  acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 5750

                                                                        
Query: 313  atcataataaatgatcaatatacgtgacaaactaactaa-gggaaactatatgactgtcc 371
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5751 atcataataaatgatcaatatacgtgacaaactaactaaggggaaactatatgactgtcc 5810

                                                                        
Query: 372  tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 5870

                                                                        
Query: 432  gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 5930

                                                                        
Query: 492  gccaatcatattaataggccttctggaatttaaacactgccagtctcttttttacagtaa 551
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 5931 gccaatcatattaatagg-cttctggaatttaaacactgccagtctcttttttacagtag 5989

                                                                        
Query: 552  tcttttcttccgggtgacccttttttttttattactttacagtattttttttccctttta 611
            || |||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 5990 tc-tttcttccggttga-ccttttttttttattactttacagta-tttttttacctttta 6046

                             
Query: 612  aaacttttttttttttt 628
            | |||||||||||||||
Sbjct: 6047 agacttttttttttttt 6063


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,190
Number of Sequences: 1807
Number of extensions: 35190
Number of successful extensions: 2921
Number of sequences better than 1.0e-20: 1
length of query: 866
length of database: 10,358,551
effective HSP length: 16
effective length of query: 850
effective length of database: 10,329,639
effective search space: 8780193150
effective search space used: 8780193150
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)