BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA07RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 757 0.0
>3x_Contig1785
Length = 37935
Score = 757 bits (382), Expect = 0.0
Identities = 418/426 (98%), Gaps = 3/426 (0%)
Strand = Plus / Plus
Query: 297 agaagctccttctctaccaactaggagaaatgttccacccccaccggaaagtgacgagga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagctccttctctaccaactaggagaaatgttccacccccaccggaaagtgacgagga 60
Query: 357 cgaagaagatgatgatgaaagagcattttctaagtctcaaaatactcctccatctccagc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaagaagatgatgatgaaagagcattttctaagtctcaaaatactcctccatctccagc 120
Query: 417 accaagagcatccaaacctggaaagaaagaatccggaccatcagctattgctgaatatga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accaagagcatccaaacctggaaagaaagaatccggaccatcagctattgctgaatatga 180
Query: 477 ttacgaagccggcgaagataatgaattgacttttgaagaaaatgaaagaatcattaatat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttacgaagccggcgaagataatgaattgacttttgaagaaaatgaaagaatcattaatat 240
Query: 537 tcaatttgtcgatgatgattggtggttgggtgaacttgaatcatcaggtgaaaaggggct 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 241 tcaatttgtcgatgatgattggtggttgggtgaacttgaatcatcaggtgaaaagggtct 300
Query: 597 atttccaagttattacgtcaacttagaggaatgatccaataaattaccactacttctaac 656
||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 attcccaagtaattacgtcaacttagaggaatgatccaataaattaccactac-tctaac 359
Query: 657 tttattcattgttaataaatgatgatgttataaagttggggggactttgaaaggaatata 716
|||| |||||||||||||||||||||||||| ||||||| |||||||||||| |||||||
Sbjct: 360 ttta-tcattgttaataaatgatgatgttat-aagttggtgggactttgaaatgaatata 417
Query: 717 tcatgt 722
||||||
Sbjct: 418 tcatgt 423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,022
Number of Sequences: 1807
Number of extensions: 12022
Number of successful extensions: 401
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)