BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA08FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig580 1116 0.0
>3x_Contig580
Length = 2708
Score = 1116 bits (563), Expect = 0.0
Identities = 670/690 (97%), Gaps = 13/690 (1%)
Strand = Plus / Minus
Query: 85 cgtttagtttctgaattcttttatctgtgattgccaaggatttcttttggagtgtcccta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 cgtttagtttctgaattcttttatctgtgattgccaaggatttcttttggagtgtcccta 1480
Query: 145 acaagctggcaagtttgaagttcaatggtaagaagcaaataatcattgcactaccaacta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 acaagctggcaagtttgaagttcaatggtaagaagcaaataatcattgcactaccaacta 1420
Query: 205 aagcagaccatcctattaaccgatataaaaggaataatgcaacaatggtcatgatgatcg 264
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 aagcagaccagcctattaaccgatataaaaggaataatgcaacaatggtcatgatgatcg 1360
Query: 265 cctctataaaggagtgcaaatacgcacatatttcggatactttgaaagcatccaccgcca 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 cctctataaaggagtgcaaatacgcacatatttcggatactttgaaagcatccaccgcca 1300
Query: 325 tcaaattaatgatagcaccaagatttgcagtggttgctgattcttcatctccatcaacgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 tcaaattaatgatagcaccaagatttgcagtggttgctgattcttcatctccatcaacgt 1240
Query: 385 gttgtttgtcatttaattcctgtggatcaacgacatcagttggctccttagtggaatttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 gttgtttgtcatttaattcctgtggatcaacgacatcagttggctccttagtggaatttg 1180
Query: 445 gagaaatttttcttctcaaagccttggagtagatttcagaaattatgatagccttcattc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 gagaaatttttcttctcaaagccttggagtagatttcagaaattatgatagccttcattc 1120
Query: 505 tgatacaaacccttctccctaaaaatagcgcctgagcagcacatatggcagttaaaattc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 tgatacaaacccttctccctaaaaatagcgcctgagcagcacatatggcagttaaaattc 1060
Query: 565 tggc-aggaacatatg-aaaatat-catccaagccaaattt-atggagcagttgattgat 620
|||| ||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 1059 tggcaaggaacataagaaaaatatacatccaagccaaatttaatggagcagttgattgat 1000
Query: 621 cttcaacatactccaaaatacgtctgagcaacattgttggaacaaaacttataactgaca 680
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 999 cttcaacatactccaaaatacgtctgagcaacattgttggaacaaaactaataactgacg 940
Query: 681 aaaatgtttgcccaggcacctttggaatggccattaaatttcattgaaaaagatggaatt 740
||| || ||||||||||||||| ||||||| | ||||||||| |||||||| ||| |||
Sbjct: 939 aaattg-ttgcccaggcacctt--gaatggcga-taaatttca-tgaaaaag-tgg-att 887
Query: 741 aagttaaaatgaaaatggtcctaaacttgg 770
||||| |||||||||| |||||| ||||||
Sbjct: 886 aagtt-aaatgaaaat-gtcctagacttgg 859
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9553
Number of Sequences: 1807
Number of extensions: 9553
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)