BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA08RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig324 650 0.0
3x_Contig735 153 7e-37
>3x_Contig324
Length = 1753
Score = 650 bits (328), Expect = 0.0
Identities = 346/352 (98%)
Strand = Plus / Minus
Query: 46 ttgtaagtgctgaagaatgttttggtgtacaaatcattgtccatgcataatttaacaatt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtaagtgctgaagaatgttttggtgtacaaatcattgtccatgcataatttaacaatt 385
Query: 106 gcgtagtccaagagaccagctccatttccctcgttatactttccctgatggtttttgaaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcgtagtccaagagaccagctccatttccctcgttatactttccctgatggtttttgaaa 325
Query: 166 aaagccgaaatatcatttatacttaccagcttcgagaagactgaagaagtcataaccagg 225
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 aaagccgaaatatcatttatacttaccagcttcgagaagactgaagaagtcagaaccagg 265
Query: 226 acatcgaacaatttttctagagaggcagatttcaatacgacattaataacagcctcatcc 285
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 acatcgaacaatttttctagagaggcagatttcaatacgacataaataacagcctcatcc 205
Query: 286 caactatcggttgtcttggagatgtttttgaaaaagtccatgttttctacaccaacgctt 345
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caactatcggatgtctaggagatgtttttgaaaaagtccatgttttctacaccaacgctt 145
Query: 346 aatctattaataacttcttgagaatcccgggaggattgaacagagaatcttt 397
|||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 144 aatctattaataacttcttgagaatcccgggaggattgaaaaaagaatcttt 93
>3x_Contig735
Length = 3283
Score = 153 bits (77), Expect = 7e-37
Identities = 170/193 (88%), Gaps = 6/193 (3%)
Strand = Plus / Minus
Query: 521 acttaagaagcatttgtttgtttgactgctttgtggacaggtcttttaacccgggtttct 580
|||||||||||||||||||||||||||||||||||||||| ||| | | | |||||| |
Sbjct: 3263 acttaagaagcatttgtttgtttgactgctttgtggacagttctctaaccacgggttcat 3204
Query: 581 caatccggtcaatacccgttattaaccgattatttttcaggcttaatgccttaagggt-c 639
|||||||||||||||| ||||| || ||||| | |||||| ||||||| ||||||| |
Sbjct: 3203 caatccggtcaataccggttatcaa-cgatttatcttcagggctaatgcc-taagggtcc 3146
Query: 640 actaacagataacgttttaccgggacctgctgagggtggttggtttgaacgaatgacagc 699
||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||| ||
Sbjct: 3145 actaacagatagcgttttacc-ggacctgctgagggt-gtttgtttgaacgaatgactgc 3088
Query: 700 ctggttattttgg 712
|| ||||||||||
Sbjct: 3087 ct-gttattttgg 3076
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,892
Number of Sequences: 1807
Number of extensions: 11892
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 2
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)