BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA09RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 1237 0.0
>3x_Contig1568
Length = 12470
Score = 1237 bits (624), Expect = 0.0
Identities = 647/652 (99%), Gaps = 2/652 (0%)
Strand = Plus / Minus
Query: 41 acaattatcgttgttatgctgtgtcattggtttgggatggttggtatttatgttgccctc 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756 acaattatcgttgttatgctgtgtcattggtttgggatggttggtatttatgttgccctc 7697
Query: 101 ggacggccagtttaggagaacatacatatctgaaaacgccttacttccatctcaagcgta 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7696 ggacggccagtttaggagaacatacatatctgaaaacgccttacttccatctcaagcgta 7637
Query: 161 cagttactttcgagaatcagagtggaatatactaagaggatatagaacccatttggactt 220
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7636 cagttactttcgagaatcagagtggaatatactaagaggatatagaacccagttggactt 7577
Query: 221 attccaatacgtatcaacaacgcatgatagtaatgctgaggtttctaaatggctgcaaga 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7576 attccaatacgtatcaacaacgcatgatagtaatgctgaggtttctaaatggctgcaaga 7517
Query: 281 gtttggggttaagactgctatatatgacgatgagcaatatggtgagactttgtacggtat 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7516 gtttggggttaagactgctatatatgacgatgagcaatatggtgagactttgtacggtat 7457
Query: 341 ctttcacgcaccaaggggtgatggtaccgaggcaatggttattgctgcaccgtggtataa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7456 ctttcacgcaccaaggggtgatggtaccgaggcaatggttattgctgcaccgtggtataa 7397
Query: 401 cgagaatcgtgaatataacactggtggtgcagctcttgcaatttcattggtgagattttt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7396 cgagaatcgtgaatataacactggtggtgcagctcttgcaatttcattggtgagattttt 7337
Query: 461 ctcacgttggccagtctggtcaaagaatattatcatcgttctaagtgaagatcctaaagc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7336 ctcacgttggccagtctggtcaaagaatattatcatcgttctaagtgaagatcctaaggc 7277
Query: 521 atctttgagatcgtgggtcacagcatatcatacgtccttagatttgacaggcggtttcaa 580
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7276 atctttgagatcgtgggtcacagcatatcatacgtccttagatttgacaggcgg-ttcaa 7218
Query: 581 ttgaatcagccatagttcttgactacccaggtaccagtgacagattcgattatatggaaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7217 ttgaatcagccatagttcttgactacccaggtaccagtgacagattcgattatatggaaa 7158
Query: 641 tacactacgatggattgaacggggaaactccgaacttagaatttggtcaacg 692
|||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 7157 tacactacgatggattgaacggtgaaactccgaacttag-atttggtcaacg 7107
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,348
Number of Sequences: 1807
Number of extensions: 12348
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)