BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA10FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 1162 0.0
>3x_Contig1686
Length = 15382
Score = 1162 bits (586), Expect = 0.0
Identities = 612/618 (99%), Gaps = 2/618 (0%)
Strand = Plus / Minus
Query: 70 aaagcaaaccctttgcatcatggaccgtcaattttttctttttaatgaacagtgctacaa 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14580 aaagcaaaccctttgcatcatggaccgtcaattttttctttttaatgaacagtgctacaa 14521
Query: 130 caggacatatatattttcttggcatggtgacaaatagcataaaagcggtggaaaggatat 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14520 caggacatatatattttcttggcatggtgacaaatagcataaaagcggtggaaaggatat 14461
Query: 190 ttattttattt-tctaattaattaatgggtgatgtttatgtaaattgaatgaatattaat 248
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14460 ttattttatttatcaaattaattaatgggtgatgtttatgtaaattgaatgaatattaat 14401
Query: 249 gttaaatgactgaaacccgatcagtaatcaatcttgtctcctcagcgtagatggataaga 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14400 gttaaatgactgaaacccgatcagtaatcaatcttgtctcctcagcgtagatggataaga 14341
Query: 309 caatgggagcaagaaaaaagaaaaaattaggatgtgattgatcagaaatcagacgttaac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14340 caatgggagcaagaaaaaagaaaaaattaggatgtgattgatcagaaatcagacgttaac 14281
Query: 369 cacttcagatttcataccgatgagtctctacctaggaagtaaactttagcccagtccata 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14280 cacttcagatttcataccgatgagtctctacctaggaagtaaactttagcccagtccata 14221
Query: 429 gcgaccaagattctgtttctgaaggagagacacatccctaggtaagcagacttccagaat 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14220 gcgaccaagattctgtttctgaaggagagacacatccctaggtaagcagacttccagaat 14161
Query: 489 aagaaggtgaaagaaccggccatttgatatttggattcaccgacagcaacgtcagcaatg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14160 aagaaggtgaaagaaccggccatttgatatttggattcaccgacagcaacgtcagcaatg 14101
Query: 549 gcttgttctgaaccaatgtaagcaagggtaccttggtggttgtatttgaaaggtttttgt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14100 gcttgttctgaaccaatgtaagcaagggtaccttggtggttgtatttgaaaggtttttgt 14041
Query: 609 tgtttcacaattctgtccaacttggagtgcaatttagaagtttcaatggcattagtagtt 668
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 14040 tgtttcacaattctgtccaacttggagtgcaatttagaagtttcagtggcattagtagtt 13981
Query: 669 tctctagaattcccattt 686
| || ||| |||||||||
Sbjct: 13980 t-tcgagatttcccattt 13964
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9312
Number of Sequences: 1807
Number of extensions: 9312
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)