BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC6ZA10RM1.SCF screened BAC_end (929 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1340 936 0.0 >3x_Contig1340 Length = 7156 Score = 936 bits (472), Expect = 0.0 Identities = 543/564 (96%), Gaps = 2/564 (0%) Strand = Plus / Plus Query: 42 gctttaaagatcc-attgaaaaaaagg-cagaaattaaaatatccgggtaacgaaatatt 99 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 4714 gctttaaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatt 4773 Query: 100 tatttcattaaaatcgatatactatttacttataatatacgtatagtttagtggtataga 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4774 tatttcattaaaatcgatatactatttacttataatatacgtatagtttagtggtataga 4833 Query: 160 tctatggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctttatct 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 4834 tctatggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagct 4893 Query: 220 cctttttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagccc 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4894 cctttttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagccc 4953 Query: 280 aaaggtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctg 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4954 aaaggtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctg 5013 Query: 340 ggaaatcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgaca 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5014 ggaaatcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgaca 5073 Query: 400 tcttttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatata 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5074 tcttttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatata 5133 Query: 460 tcttgagtgaatctatatgtagtattacttattaagtttgccacttatttagaccttttt 519 |||||||||||||||||||||||||||||||| | |||||||||| || |||||||||| Sbjct: 5134 tcttgagtgaatctatatgtagtattacttataaggtttgccactatttcagaccttttt 5193 Query: 520 gtaccttttggaagaatgtttattgtccccggaaatgaaaccgcttttaccgcttaaaaa 579 ||| |||||||| || ||||||||| || || |||||||| ||||| || || ||||| Sbjct: 5194 gtagcttttggatgattgtttattggtccgggtaatgaaacggctttgacagcataaaag 5253 Query: 580 acaggacacattgaggccaaacgc 603 |||||||||||||||||||||||| Sbjct: 5254 acaggacacattgaggccaaacgc 5277 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,763 Number of Sequences: 1807 Number of extensions: 10763 Number of successful extensions: 92 Number of sequences better than 1.0e-20: 1 length of query: 929 length of database: 10,358,551 effective HSP length: 16 effective length of query: 913 effective length of database: 10,329,639 effective search space: 9430960407 effective search space used: 9430960407 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)