BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC6ZA10RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1340                                                         936   0.0  

>3x_Contig1340 
          Length = 7156

 Score =  936 bits (472), Expect = 0.0
 Identities = 543/564 (96%), Gaps = 2/564 (0%)
 Strand = Plus / Plus

                                                                        
Query: 42   gctttaaagatcc-attgaaaaaaagg-cagaaattaaaatatccgggtaacgaaatatt 99
            ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4714 gctttaaagatcccattgaaaaaaagggcagaaattaaaatatccgggtaacgaaatatt 4773

                                                                        
Query: 100  tatttcattaaaatcgatatactatttacttataatatacgtatagtttagtggtataga 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4774 tatttcattaaaatcgatatactatttacttataatatacgtatagtttagtggtataga 4833

                                                                        
Query: 160  tctatggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctttatct 219
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 4834 tctatggtacagtggtgggtgtggtaataataatgatatcaaatcattaattctctagct 4893

                                                                        
Query: 220  cctttttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagccc 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 cctttttcaattccttggtgaaatcatcctctacttcgatatcgtcccagtcttcagccc 4953

                                                                        
Query: 280  aaaggtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctg 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 aaaggtttgaatcttttgttagatcttgtgaaacaggttgcgatggccaagaatcagctg 5013

                                                                        
Query: 340  ggaaatcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgaca 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 ggaaatcctcgaattcatcgtcatcctcaagagaagattttcttggttctttatttgaca 5073

                                                                        
Query: 400  tcttttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatata 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 tcttttcgcttgtacaacgctgatgtatcaggtcaaagtgtatatcaggggctgtatata 5133

                                                                        
Query: 460  tcttgagtgaatctatatgtagtattacttattaagtttgccacttatttagaccttttt 519
            |||||||||||||||||||||||||||||||| | ||||||||||  || ||||||||||
Sbjct: 5134 tcttgagtgaatctatatgtagtattacttataaggtttgccactatttcagaccttttt 5193

                                                                        
Query: 520  gtaccttttggaagaatgtttattgtccccggaaatgaaaccgcttttaccgcttaaaaa 579
            ||| |||||||| || |||||||||  || || |||||||| ||||| || || ||||| 
Sbjct: 5194 gtagcttttggatgattgtttattggtccgggtaatgaaacggctttgacagcataaaag 5253

                                    
Query: 580  acaggacacattgaggccaaacgc 603
            ||||||||||||||||||||||||
Sbjct: 5254 acaggacacattgaggccaaacgc 5277


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,763
Number of Sequences: 1807
Number of extensions: 10763
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)