BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA12FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1189 1063 0.0
>3x_Contig1189
Length = 5010
Score = 1063 bits (536), Expect = 0.0
Identities = 601/620 (96%), Gaps = 2/620 (0%)
Strand = Plus / Minus
Query: 85 atctgcatttccccagggaaaacagtcggtatggaattagaaatgaaatccgaatggaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4160 atctgcatttccccagggaaaacagtcggtatggaattagaaatgaaatccgaatggaaa 4101
Query: 145 gaaaaaagagattgggtatcaaatggcagggcttataacagacctcctgcaaattaccac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4100 gaaaaaagagattgggtatcaaatggcagggcttataacagacctcctgcaaattaccac 4041
Query: 205 ccttgtattccaatttcgattcgaaaagctaggtttgcttcaagtttcgcgtttttaggt 264
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4040 ccttgtattcctatttcgattcgaaaagctaggtttgcttcaagtttcgcgtttttaggt 3981
Query: 265 cttttttttttcaagtcattttccttcctagtatggtgaacattcttttcaattagtata 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3980 cttttttttttcaagtcattttccttcctagtatggtgaacattcttttcaattagtata 3921
Query: 325 actgttacagtaaatgattttagaaagaataatttaccagaagtggaagaaatattagct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3920 actgttacagtaaatgattttagaaagaataatttaccagaagtggaagaaatattagct 3861
Query: 385 gtcttgttaatagttttctgccacactcgttttgaatttggtaggttttttcttccattg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3860 gtcttgttaatagttttctgccacactcgttttgaatttggtaggttttttcttccattg 3801
Query: 445 ttatttggcatacatatataccaagacgtgaagtttaattgtgtttttctttggtgaaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3800 ttatttggcatacatatataccaagacgtgaagtttaattgtgtttttctttggtgaaaa 3741
Query: 505 atgtacctgagggaaatactgagaaaatgagacaaggcttatcacataaaactgggagta 564
||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct: 3740 ttgtacctgagggaaatactgagaaattgagacaaggctcatcacataaaactggaagta 3681
Query: 565 gattaaaccattaaagttatcgtgaaaaaaatattttcaattaactttaaccatttttaa 624
||||||||||| ||||||||||||||||||||| |||||||| |||| |||||| || ||
Sbjct: 3680 gattaaaccataaaagttatcgtgaaaaaaataatttcaattcacttcaaccatcttcaa 3621
Query: 625 cccacgaccaattgaattcactagacggtaccagattttcgacatagagaagttttttat 684
||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||||
Sbjct: 3620 -ccacgaccaattgaattcactagacggtaccagatatcagacatagag-agttatttat 3563
Query: 685 ttaggcaagcgaatttcact 704
||||||||||||| |||||
Sbjct: 3562 ctaggcaagcgaatctcact 3543
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,637
Number of Sequences: 1807
Number of extensions: 10637
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)