BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZA12RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1005 0.0
>3x_Contig1281
Length = 7825
Score = 1005 bits (507), Expect = 0.0
Identities = 577/595 (96%), Gaps = 4/595 (0%)
Strand = Plus / Minus
Query: 53 atgttcctttgca-gtaattctgaaaggtgtttacctgacgttgtcatgttggagtctgt 111
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 atgttcctttgcaagtaattctgaaaggtgtttacctgacgttgtcatgttggagtctgt 691
Query: 112 aatctcgtgatccgtacccaatttataagattttctctggtttttgaacaatcggatggg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aatctcgtgatccgtacccaatttataagattttctctggtttttgaacaatcggatggg 631
Query: 172 gttaatatcttttgttaagaagaacatgacctctaacaacggtcttttaacgaaatttgg 231
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 630 gttaatatcttttgttaagaagaacatgacctctaacaacggccaactaacgaaatttgg 571
Query: 232 gtcaacagcgtctgacaaagaactagccactgttagaagaaagccaaaaactttattttt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 gtcaacagcgtctgacaaagaactagccactgttagaagaaagccaaaaactttattttt 511
Query: 292 atcaaatgcggttatgacactatttatggaaatatcatcaacggtaatattcgttggtaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atcaaatgcggttatgacactatttatggaaatatcatcaacggtaatattcgttggtaa 451
Query: 352 catttcagccatagtcaaaggtctcttcaatcttttgacactggatattgtaacttcacc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 catttcagccatagtcaaaggtctcttcaatcttttgacactggatattgtaacttcacc 391
Query: 412 tggttctattgccaccacattttttagaaaattaagaaccattcgtatcagagagtcatt 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tggttctattgccaccacattttttagaaaattaagaaccattcgtatcagagagtcatc 331
Query: 472 cctagcagtcctatgatctacattcacactcatgacgttcagggctaatctaattgctgc 531
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctagcagtcctatgatctacatccacactcatgacgttcagggctaatctaattgctgc 271
Query: 532 cttgagaacctttccgttttctggggtcaaaa-tgcatgcttttacagc-attgatgctt 589
||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||
Sbjct: 270 cttgagaacctttccgttttctgttgtcaaaattgcatgcttatacagcaattgatgctt 211
Query: 590 ttttagttcaaagt-ataatttacttggttatccgatgactgatctgttttgatt 643
||| || ||||||| |||||| |||||||||| |||||||||||||||| |||||
Sbjct: 210 tttcagctcaaagtaataattcacttggttatacgatgactgatctgttatgatt 156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7804
Number of Sequences: 1807
Number of extensions: 7804
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)