BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB01RM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 1425 0.0
>3x_Contig1606
Length = 11468
Score = 1425 bits (719), Expect = 0.0
Identities = 789/806 (97%), Gaps = 5/806 (0%)
Strand = Plus / Plus
Query: 46 agctttgcattaaagtaactttatactgtttcctcattgtttctttatgtcagatatgga 105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10164 agctttgcattaaagtaactttaaactgtttcctcattgtttctttatgtcagatatgga 10223
Query: 106 gcatcaattgactaaggttttggttggacaattcctagaaaaaaatggttttaccgactc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10224 gcatcaattgactaaggttttggttggacaattcctagaaaaaaatggttttaccgactc 10283
Query: 166 tttggctagttacttaagagaatcgggggtatctatgacttctgtgaagcatattgtagt 225
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 10284 tttggctagttacttaagagaatcgggggtatctatgacttctgtgaagcaaacgg-agt 10342
Query: 226 atgatgacctggaagatatcatcaaagacagagttggtttcaatgaacaggctgtcgttc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10343 atgatgacctggaagatatcatcaaagacagagttggtttcaatgaacaggctgtcgttc 10402
Query: 286 agaaattgaaaactgtttcccttaacagtgagcttgatcctgagaatgttacaaaattta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10403 agaaattgaaaactgtttcccttaacagtgagcttgatcctgagaatgttacaaaattta 10462
Query: 346 cgatacctagttggaaccaccgattagcatgggaagaagtggtatcgacatcagagcaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10463 cgatacctagttggaaccaccgattagcatgggaagaagtggtatcgacatcagagcaga 10522
Query: 406 gatctcttgttataaagacgaaatttttgacggataatcttcttgcctgtgccacagtcg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10523 gatctcttgttataaagacgaaatttttgacggataatcttcttgcctgtgccacagtcg 10582
Query: 466 ataaaaaattgatcgtatcagatgtcgatcataataatgtgacggtagattcgattagcc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10583 ataaaaaattgatcgtatcagatgtcgatcataataatgtgacggtagattcgattagcc 10642
Query: 526 agccgggcatcatcaaatattttggtcctataacagaaaaatttcactatacgggtacaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10643 agccgggcatcatcaaatattttggtcctataacagaaaaatttcactatacgggtacaa 10702
Query: 586 ttgacggtaaggttaatataagaaacttggttgatggtgtcaacagtcaatcgtggagtt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10703 ttgacggtaaggttaatataagaaacttggttgatggtgtcaacagtcaatcgtggagtt 10762
Query: 646 ttaatttacctggaagagctgntatggccatggaaatggtgttattagaagatggaaaga 705
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 10763 ttaatttacctggaagagctgtaatggccatggaaatggtgttattagaagatggaaaga 10822
Query: 706 tactctgtttctattgctcgttgaataacacaattaatgccttacg-ttacattttggaa 764
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct: 10823 tactctgtttctattgctcgttgaataacacaattaatgcc-tacgtttacaatttggaa 10881
Query: 765 acggaagaaacgagtaaggtaagtgaatataagctcctttctgggtggtcccgcacttaa 824
||||||||||||||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct: 10882 acggaagaaacgagtaaggtaagtgaatataagctcctttctgtgt-gtaccgcactaca 10940
Query: 825 gttagcattcttctgagaacggatgt 850
|||||||||| |||||| ||||||||
Sbjct: 10941 gttagcattc-tctgaggacggatgt 10965
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6457
Number of Sequences: 1807
Number of extensions: 6457
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)