BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB02FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig308 991 0.0
>3x_Contig308
Length = 1037
Score = 991 bits (500), Expect = 0.0
Identities = 536/544 (98%), Gaps = 3/544 (0%)
Strand = Plus / Plus
Query: 304 agaaagtattgaacagctattgactcaaatcaagactgattcagatgatgaagttagaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 agaaagtattgaacagctattgactcaaatcaagactgattcagatgatgaagttagaga 66
Query: 364 tagagcatccattgctttgcaattcatcgattcggttaagtccaagaaagatgtttccaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 tagagcatccattgctttgcaattcatcgattcggttaagtccaagaaagatgtttccaa 126
Query: 424 tatcgcacaaaatttcattcgcccaacttctacctatgacgttgttgctcttgaatcaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tatcgcacaaaatttcattcgcccaacttctacctatgacgttgttgctcttgaatcaaa 186
Query: 484 actatcacactatttgtcacaaggccaagaggcattcaagactccatttgacgtctcgtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 actatcacactatttgtcacaaggccaagaggcattcaagactccatttgacgtctcgtc 246
Query: 544 agttgccaaatactccgaagacgagaagaaggcattggatttgaaacgcagacaagagca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agttgccaaatactccgaagacgagaagaaggcattggatttgaaacgcagacaagagca 306
Query: 604 agccttcaaccatacagaagaatcttccaacagtggtgccggaaatggtaacggtactga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agccttcaaccatacagaagaatcttccaacagtggtgccggaaatggtaacggtactga 366
Query: 664 aaagggtggtagaaagggtgatagattggatgacaatagcttcaatggaccttcattgga 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaagggtggtagaaagggtgatagattggatgacaatagcttcaatggaccttcattgga 426
Query: 724 atctgaagaagaagatttgctattgtccaaatacgtggatgaaatgttctcctttgaaac 783
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct: 427 atctgaagaagaagatttgctattgtccaaatacgtggatgaaatgtcctcc-ttggaac 485
Query: 784 catttcagtcctttggcaagtgtatccattccttccaagatggtcccattaacgggaaat 843
||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct: 486 aattccagtcctttggcaagtgtatccatt-cttccaagattgtcccattaac-ggaaat 543
Query: 844 tgaa 847
||||
Sbjct: 544 tgaa 547
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7717
Number of Sequences: 1807
Number of extensions: 7717
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)