BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB02RM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1244 1590 0.0
>3x_Contig1244
Length = 4689
Score = 1590 bits (802), Expect = 0.0
Identities = 828/836 (99%), Gaps = 1/836 (0%)
Strand = Plus / Minus
Query: 43 gcttgatgaacggaccattaatcctatttaatccttcaaatcacgtgatttttgtttctt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 gcttgatgaacggaccattaatcctatttaatccttcaaatcacgtgatttttgtttctt 3445
Query: 103 ttcaccacttcctgtatggaaaaaaaaaaattcggttctattcaagatactgttctatca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ttcaccacttcctgtatggaaaaaaaaaaattcggttctattcaagatactgttctatca 3385
Query: 163 agcgatgagatgcgatgaggtaactttttacttgaatatcttcgtgatatcattcggttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3384 agcgatgagatgcgatgaggtaactttttacttgaatatcttcgtgatatcagtcggttt 3325
Query: 223 gagcattatctttgtattattaccaaactggaatatattagagcagaataaccgaagttt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 gagcattatctttgtattattaccaaactggaatatattagagcagaataaccgaagttt 3265
Query: 283 gttctatagatacttcctttcagtggacaggaaatcaaggtcagataactcaaattgata 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 gttctatagatacttcctttcagtggacaggaaatcaaggtcagataactcaaattgata 3205
Query: 343 atgtccggtagaacaagattcaataagaacaacgcgacgaagtttgctgtggtgcataga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 atgtccggtagaacaagattcaataagaacaacgcgacgaagtttgctgtggtgcataga 3145
Query: 403 ccacacgatgatcctaattatcatgatcccgaggcaggtgaacatgttcttgttcctgtt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 ccacacgatgatcctaattatcatgatcccgaggcaggtgaacatgttcttgttcctgtt 3085
Query: 463 cagaatcgtcataaaaagaaggatgtctcacagagttcagaagatgggccaattccgaaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 cagaatcgtcataaaaagaaggatgtctcacagagttcagaagatgggccaattccgaaa 3025
Query: 523 cttgtctctacaccaactgcaccaagcacatcagcttctaaaaatgctgttaatgaacac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 cttgtctctacaccaactgcaccaagcacatcagcttctaaaaatgctgttaatgaacac 2965
Query: 583 gtcggtgaagcagctctatatggtattacatttgacgattccaaatacgattatacacag 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 gtcggtgaagcagctctatatggtattacatttgacgattccaaatacgattatacacag 2905
Query: 643 catttgaaacctattggcttagacccatcccattccgttttcattcctgccaagagtaag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2904 catttgaaacctattggcttagacccatcccattccgttttcattcctgccaagagtaag 2845
Query: 703 aagcctattgagaagaagaagttgaaggatccagaatctctgtttgtggagccaagctat 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2844 aagcctattgagaagaagaagttgaaggatccagaatctctgtttgtggagccaagctat 2785
Query: 763 caagatctggagaacaaggctgctgagccgttgtttgtgagaagtgttgccaagccagaa 822
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 2784 caagatctggagaacaaggctgctgagccgttgtttgtgagaggtgttgccaagcaagaa 2725
Query: 823 tatttggatcanatgcaagagatccgggnagaac-tgtggggttcaagcctgatat 877
||||||||||| ||||||||||| | || ||||| |||||||||||||||||||||
Sbjct: 2724 tatttggatcaaatgcaagagattccgggagaacttgtggggttcaagcctgatat 2669
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,012
Number of Sequences: 1807
Number of extensions: 13012
Number of successful extensions: 133
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)