BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC6ZB03FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig808 1193 0.0
>3x_Contig808
Length = 2957
Score = 1193 bits (602), Expect = 0.0
Identities = 659/672 (98%), Gaps = 5/672 (0%)
Strand = Plus / Minus
Query: 87 gttatgtgacattgacgaagctgttatcagagtttccaaggagtacttaccagagatggc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 gttatgtgacattgacgaagctgttatcagagtttccaaggagtacttaccagagatggc 1187
Query: 147 gaagtcttattcccatcctaaggttatagactcatatcggtgatggattccaattcttga 206
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 1186 gaagtcttattcccatcctaaggtca-agactcatatcggtgatggattccaattcttga 1128
Query: 207 gagactaccaaaactcnnttgacgttatcatcactgactcatctgacccggaaggtccag 266
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 gagactaccaaaacacttttgacgttatcatcactgactcatctgacccggaaggtccag 1068
Query: 267 ccgcctctttgttccaacaatcttacttcgaattgttgaacggtgccttgactgagaaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 ccgcctctttgttccaacaatcttacttcgaattgttgaacggtgccttgactgagaaag 1008
Query: 327 gtgtcatttccactcaagctgaaagtatgtggatccacttgccaatcatcaaggaattga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gtgtcatttccactcaagctgaaagtatgtggatccacttgccaatcatcaaggaattga 948
Query: 387 agaaggcttgtaaggaggtcttcccaactgttggttatgcctacaccaccattccaactt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 agaaggcttgtaaggaggtcttcccaactgttggttatgcctacaccaccattccaactt 888
Query: 447 atccaaccggtcaaattggttttatggtgtgctctaaggatgccaatgtggatgtcacta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 atccaaccggtcaaattggttttatggtgtgctctaaggatgccaatgtggatgtcacta 828
Query: 507 aaccgttgagatcaatctcagaagaagaagaagaagccaagtaccgttactacaacaaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 aaccgttgagatcaatctcagaagaagaagaagaagccaagtaccgttactacaacaaga 768
Query: 567 aagtgcacgaagcctctttcgtactacctacttgggtcgctaaagaattggacctgtgac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aagtgcacgaagcctctttcgtactacctacttgggtcgctaaagaattggacctgtgac 708
Query: 627 aacttaacgaattgataatccctcttttttttttatgcggtcttgtagatcgctatttct 686
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 707 aacttaacgaattgataatccctcttttttctttatgcggtcttgtagatcgctatttct 648
Query: 687 atttttattccctgacttattaactattaacgttttcacctcattgatttaaggctagac 746
| ||||||| |||||||||| ||||||||||||| ||| ||||| ||||| |||||||||
Sbjct: 647 a-ttttatt-cctgacttatcaactattaacgttatca-ctcatagattt-aggctagac 592
Query: 747 taattaattctt 758
||||||||||||
Sbjct: 591 taattaattctt 580
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,097
Number of Sequences: 1807
Number of extensions: 11097
Number of successful extensions: 335
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)